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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACATGGAATGTGACCTGCACATATTCCCAATTTCTTGCTCAGAAGACTCCATCCTGCTGTGTATCTCTatcatcgttttataatgacacaattgtgaactgcccaacatgctcatgtggctgccagaacccaagtgggtcaaactgtgtgaagtgagttgatctgcct...

Basic information

species Zea mays
transcript GRMZM5G826714_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G826714_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g32110.3 (Oryza sativa), 5'ss of exon 2
TGACATGGAATGTGACCTGCACATATTCCCAATTTCTTGCTCAGAAGACTCCATCCTGCTGTGTATCTCTatcatcgttttataatgacacaattgtgaactgcccaacatgctcatgtggctgccagaac------ccaagtgggtcaaactgtgtgaagtgagttgatctgcct---------------------------------------------------------------------------
                                                            |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||       |||||     || |||||| ||||||||| ||    |                                                                            
------------------------------------------------------------GTGTATCTCTCTCATCATTTTATAATGACACAATTGTGAACTGCCCAACATGCTCTTGTGGCTGCCAAAACAATGGGACAAGTCCTGGAAGCTGTGTAAAgtgagttaataaaaccaaaactcttacttcgcttcttgttgaggcccaacttttctgcaaaattgctaacaagttccatgcatttccacag

upper sequence: GRMZM5G826714_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g54750.1 (Oryza sativa), 5'ss of exon 4
TGACATGGAATGTGACCTGCACATATTCCCAATTTCTTGCTCAGAAGACTCCATCCTGCTGTGTATCTCTatcatcgttttataatgacacaattgtgaactgcccaacatgctcatgtggctgccagaac--ccaagtgggtc----aaactgtgtgaagtgagttgatctgcct---------------
                                                            |||||||||| || || ||||| |||||||||||||||||||||||||||||||| ||||||||||| |||          |||     | |||||| |||||||||  |  ||                 
------------------------------------------------------------GTGTATCTCTCTCGTCATTTTACAATGACACAATTGTGAACTGCCCAACATGCTCTTGTGGCTGCCAAAACAATGGGACTAGTCCTGGGAGCTGTGTAAAgtgagttactaagctgttattgttatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4610038|gb|AI600877.1|AI600877
EST:     ACATATTCCCAATTTCTTGCTCAGAAGACTCCATCCTGCTGTGTATCTCT                         ATTATCCATGGCTGCCGAATGCAAGCCCTCTAACAAAACCATTGGCACTCC
genomic: ACATATTCCCAATTTCTTGCTCAGAAGACTCCATCCTGCTGTGTATCTCTatcatcgttt ... tctcctgaaaATTATCCATGGCTGCCGAATGCAAGCCCTCTAACAAAACCATTGGCACTCC