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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGAGGCATTCAGCATCCCCTTCGTGGCCTTTTTCTGAGAAGTTATCTTTCTCAAATAAGCAGAGACAAGTTGCCTGATATTGGTTCCGAGTATGAAGGgtactgtacctttacttcatgtcatgatattacttaaccaagcctttttagagtttcaatagtatcaagctaatttttggccaagagttagtttgttctt...

Basic information

species Zea mays
transcript GRMZM5G825524_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G825524_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g58700.1 (Oryza sativa), 5'ss of exon 4
GCCGAGGCATTCAGCATCCCCTTCGTGGCCTTTTTCTGAGAAGTTATCTTTCTCAAATAAGCAGAGACAAGTTGCCTGATATTGGTTCCGAGTATGAAGGgtactgtacctttacttcatgtcat---gatattacttaacc-aagcctttttagagtttcaatagtat-caagctaat-ttttggccaaga--gttagtttgttctt
| |||||||| || ||||| |||||||| ||||| || ||||| || || ||||| |||||| |||||||  |||| |||||||||||||||||||||||||| || || |  |   ||||   |    || ||   ||||  |||      ||  ||||||   ||||  ||  |  | | ||   | | |   ||| ||       
GTCGAGGCATCCAACATCCTCTTCGTGGGCTTTTCCTAAGAAGCTACCTATCTCAGATAAGCCGAGACAAACTGCCAGATATTGGTTCCGAGTATGAAGGgtaatgcac-tccatgccatgctgtttaaatgttcagtaactgaagataaactaatgtttcatatgtatgtaaaatgttgtcttattctacaacattaatt-------

upper sequence: GRMZM5G825524_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA01G36870.1 (Glycine max), 5'ss of exon 4
GCCGAGGCATTCAGCATCCCCTTCGTGGCCTTTTTCTGAGAAGTTATCTTTCTCAAATAAGCAGAGACAAGTTGCCTGATATTGGTTCCGAGTATGAAGGgtactgtacctttacttcatgtcatgatattacttaaccaagcctttttagagtt-tcaatagtatcaagctaatttttggccaagagttagtttgttctt
| |||||||||||||| ||  ||||||| || ||||| |||||||| ||||||||| | || || || || ||||| ||||||||||| ||||| |||||||     | |   | ||  || | |  |  | |||    | ||    |||    | |     || ||    |    || |      ||||    ||  || 
GTCGAGGCATTCAGCACCCTGTTCGTGGACTCTTTCTCAGAAGTTACCTTTCTCAAGTTAGTAGGGATAAATTGCCAGATATTGGTTCAGAGTACGAAGGgtgagtaagcaagattttttgccctc-tgctcctttcataggcaggattattcctctttgaggtttcttagttgagttggatttgaagttttaatgaactg

upper sequence: GRMZM5G825524_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA11G08390.1 (Glycine max), 5'ss of exon 4
GCCGAGGCATTCAGCATCCCCTTCGTGGCCTTTTTCTGAGAAGTTATCTTTCTCAAATAAGCAGAGACAAGTTGCCTGATATTGGTTCCGAGTATGAAGGgt-actgtacctttacttcatg-tcatgatattacttaaccaagcctttttagagtttcaatagtatcaagctaatttttggccaagagttagtttgttctt
|||| ||||||||||| ||  |||| || || ||||| |||||||| ||||||||| | ||||| ||||| ||||| ||||||||||| ||||| ||||||| | |     ||| |    || || |   ||     |    |  | | || ||| ||   |||| | |  || ||||  ||     | | |  |    |  
GCCGTGGCATTCAGCACCCTGTTCGCGGACTCTTTCTCAGAAGTTACCTTTCTCAAGTTAGCAGGGACAAATTGCCAGATATTGGTTCAGAGTACGAAGGgtgagtaattttttgccctctgctcctttcataggcaagattattcctctttgaggtttcttagt-tgagtctgatttgaggtttc-aatgaactgagccag

upper sequence: GRMZM5G825524_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA14G40270.1 (Glycine max), 5'ss of exon 4
GCCGAGGCATTCAGCATCCCCTTCGTGGCCTTTTTCTGAGAAGTTATCTTTCTCAAATAAGCAGAGACAAGTTGCCTGATATTGGTTCCGAGTATGAAGGgtactgtacctttacttcatgtcatgatattacttaaccaagcctttttagagtttca---atagtatcaagctaatttttggccaagagttagtttgttctt--------
   | |   |||| |||||| ||||||| || ||| |||| ||||| ||||||||| | || | ||| ||||||||||||||||| |  || ||||||| |    |||   ||  |   ||    | | ||  | ||   |   |||| |  || |     ||  | |||   ||||||   |   |  ||   | | ||||         
---GTGCTGTTCAACATCCCATTCGTGGTCTATTTTTGAGGAGTTACCTTTCTCAAGTCAGTAAAGATAAGTTGCCTGATATTGGCTATGAATATGAAGAGGG-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19351762|gb|BM896294.1|BM896294
EST:     TCTCAAATAAGCAGAGACAAGTTGCCTGATATTGGTTCCGAGTATGAAGG                         GGATGCTGAAACTATTAACGACGC
genomic: TCTCAAATAAGCAGAGACAAGTTGCCTGATATTGGTTCCGAGTATGAAGGgtactgtacc ... aatcatgcagGGATGCTGAAACTATTAACGACGC
EST: gi|22491272|gb|BU051195.1|BU051195
EST:     TCTCAAATAAGCAGAGACAAGTTGCCTGATATTGGTTCCGAGTATGAAGG                         GGATGCTGAAACTATTAACGACGC
genomic: TCTCAAATAAGCAGAGACAAGTTGCCTGATATTGGTTCCGAGTATGAAGGgtactgtacc ... aatcatgcagGGATGCTGAAACTATTAACGACGC
EST: gi|18964924|gb|BM661289.1|BM661289
EST:     TCTCAAATAAGCAGAGACAAGTTGCCTGATATTGGTTCCGAGTATGAAGG                         GGATGCTGAAACTATTAACGACGC
genomic: TCTCAAATAAGCAGAGACAAGTTGCCTGATATTGGTTCCGAGTATGAAGGgtactgtacc ... aatcatgcagGGATGCTGAAACTATTAACGACGC
EST: gi|32824252|gb|CD963974.1|CD963974
EST:     TCTCAAATAAGCAGAGACAAATCGCCTGATATTGGTTCCGAGTATGAAGG                         GGATGCTGAAACTATTA
genomic: TCTCAAATAAGCAGAGACAAGTTGCCTGATATTGGTTCCGAGTATGAAGGgtactgtacc ... aatcatgcagGGATGCTGAAACTATTA