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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTCAGTGTACCTGGTTTTCTTCTCCAACCTATTCTCTGATGAGCTGGATGGACTAGTAACTTATCGGAGTTCAAATCTATCCAATTTCACTTTGGGGgtaaaagctgtcaatattttattcccattcaagaaagtctatgttatcatttactatccatgtgcccaaaccttgactttgggttttgtagggttttagc...

Basic information

species Zea mays
transcript GRMZM5G825226_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G825226_T04 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g56230.1 (Oryza sativa), 5'ss of exon 4
GGTGTCAGTGTACCTGGTTTTCTTCTCCAACCTATTCTCTGATGAGCTGGATGGACTAGTAACTTATCGGAGTTCAAATCTATCCAATTTCACTTTGGGGgtaaaagctgtcaatattttattcccattcaagaa-agtctatgttatcatttac---tatccatgtgcccaaaccttgactttgggttttgtagggttttagc
  ||||||| ||||| || ||||||||||||||||||||||||||||||||||| | ||||||   |||||||||||| || |||||||| ||  ||||||||| |  ||||| | ||| || | |||| || || ||  |||| |   || |||   |   | | |  ||| |  ||  ||  |  ||   |  |  ||||| 
AATGTCAGTTTACCTAGTATTCTTCTCCAACCTATTCTCTGATGAGCTGGATGGCCCAGTAACAGTTCGGAGTTCAAACCTCTCCAATTTTACACTGGGGgtaacatatgtcactgttt-atccgcattgaataataggttatgctgatatatacattttctccttttgccacatgttagct--gaattaaatctg--tttag-

upper sequence: GRMZM5G825226_T04 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g56230.5 (Oryza sativa), 5'ss of exon 4
GGTGTCAGTGTACCTGGTTTTCTTCTCCAACCTATTCTCTGATGAGCTGGATGGACTAGTAACTTATCGGAGTTCAAATCTATCCAATTTCACTTTGGGGgtaaaagctgtcaatattttattcccattcaagaa-agtctatgttatcatttac---tatccatgtgcccaaaccttgactttgggttttgtagggttttagc
        | ||||| || ||||||||||||||||||||||||||||||||||| | ||||||   |||||||||||| || |||||||| ||  ||||||||| |  ||||| | ||| || | |||| || || ||  |||| |   || |||   |   | | |  ||| |  ||  ||  |  ||   |  |  ||||| 
--------TTTACCTAGTATTCTTCTCCAACCTATTCTCTGATGAGCTGGATGGCCCAGTAACAGTTCGGAGTTCAAACCTCTCCAATTTTACACTGGGGgtaacatatgtcactgttt-atccgcattgaataataggttatgctgatatatacattttctccttttgccacatgttagct--gaattaaatctg--tttag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148934690|gb|EC878738.2|EC878738
EST:     ATGGACTAGTAACTTATCGGAGTTCAAATCTATCCAATTTCACTTTGGGG                         GTTTCTGTTGGGTATTTCATCACTGACCTTGCTATGATATTATGGGCTTAT
genomic: ATGGACTAGTAACTTATCGGAGTTCAAATCTATCCAATTTCACTTTGGGGgtaaaagctg ... atttgtccagGTTTCTGTTGGGTATTTCATCACTGACCTTGCTATGATATTATGGGCTTAT
EST: gi|71771875|gb|DR969812.1|DR969812
EST:     ATGGACTAGTAACTTATCGGAGTTCAAATCTATCCAATTTCACTTTGGGG                         GTTTCTGTTGGGTATTTCATCACTGACCTTGCTATGATATTATGGGCTTAT
genomic: ATGGACTAGTAACTTATCGGAGTTCAAATCTATCCAATTTCACTTTGGGGgtaaaagctg ... atttgtccagGTTTCTGTTGGGTATTTCATCACTGACCTTGCTATGATATTATGGGCTTAT
EST: gi|76925225|gb|DV170328.1|DV170328
EST:     ATGGACTAGTAACTTATCGGAGTTCAAATCTATCCAATTTCACTTTGGGG                         GTTTCTGTTGGGTATTTCATCACTGACCTTGCTATGATATTATGGGCTTAT
genomic: ATGGACTAGTAACTTATCGGAGTTCAAATCTATCCAATTTCACTTTGGGGgtaaaagctg ... atttgtccagGTTTCTGTTGGGTATTTCATCACTGACCTTGCTATGATATTATGGGCTTAT
EST: gi|21330525|gb|BQ485906.1|BQ485906
EST:     ATGGACTAGTAACTTATCGGAGTTCAAATCTATCCAATTTCACTTTGGGG                         GTTTCTGTTGGGTATTTCATCACTGACCTTGCTATGATATTATGGGC
genomic: ATGGACTAGTAACTTATCGGAGTTCAAATCTATCCAATTTCACTTTGGGGgtaaaagctg ... atttgtccagGTTTCTGTTGGGTATTTCATCACTGACCTTGCTATGATATTATGGGC
EST: gi|78082331|gb|DV510743.1|DV510743
EST:     ATGGACTAGTAACTTATCGGAGTTCAAATCTATCCAATTTCACTTTGGGG                         GTTTCTGTTGGGTATTTCATCACTGACCTTGCTATGATATTATGGGCTTAT
genomic: ATGGACTAGTAACTTATCGGAGTTCAAATCTATCCAATTTCACTTTGGGGgtaaaagctg ... atttgtccagGTTTCTGTTGGGTATTTCATCACTGACCTTGCTATGATATTATGGGCTTAT
EST: gi|78112273|gb|DV530667.1|DV530667
EST:     ATGGACTAGTAACTTATCGGAGTTCAAATCTATCCAATTTCACTTTGGGG                         GTTTCTGTTGGGTATTTCATCACTGACCTTGCTATGATATTATGGGCTTAT
genomic: ATGGACTAGTAACTTATCGGAGTTCAAATCTATCCAATTTCACTTTGGGGgtaaaagctg ... atttgtccagGTTTCTGTTGGGTATTTCATCACTGACCTTGCTATGATATTATGGGCTTAT
EST: gi|74237536|gb|DT645450.1|DT645450
EST:     ATGGACTAGTAACTTATCGGAGTTCAAATCTATCCAATTTCACTTTGGGG                         GTTTCTGTTGGGTATTTCATCACTGACCTTGCTATGATATTATGGGCTTAT
genomic: ATGGACTAGTAACTTATCGGAGTTCAAATCTATCCAATTTCACTTTGGGGgtaaaagctg ... atttgtccagGTTTCTGTTGGGTATTTCATCACTGACCTTGCTATGATATTATGGGCTTAT
EST: gi|149078049|gb|EE166790.2|EE166790
EST:     ATGGACTAGTAACTTATCGGAGTTCAAATCTATCCAATTTCACTTTGGGG                         GTTTCTGTTGGGTATTTCATCACTGACCTTGCTATGATATTATGGGCTTAT
genomic: ATGGACTAGTAACTTATCGGAGTTCAAATCTATCCAATTTCACTTTGGGGgtaaaagctg ... atttgtccagGTTTCTGTTGGGTATTTCATCACTGACCTTGCTATGATATTATGGGCTTAT
EST: gi|76918369|gb|DV167265.1|DV167265
EST:     ATGGACTAGTAACTTATCGGAGTTCAAATCTATCCAATTTCACTTTGGGG                         GTTTCTGTTGGGTATTTCATCACTGACCTTGCTATGATATTATGGGCTTAT
genomic: ATGGACTAGTAACTTATCGGAGTTCAAATCTATCCAATTTCACTTTGGGGgtaaaagctg ... atttgtccagGTTTCTGTTGGGTATTTCATCACTGACCTTGCTATGATATTATGGGCTTAT
EST: gi|87154553|gb|DY399342.1|DY399342
EST:     ATGGACTAGTAACTTATCGGAGTTCAAATCTATCCAATTTCACTTTGGGG                         GTTTCTGTTGGGTATTTCATCACTGACCTTGCTATGATATTATGGGCTTAT
genomic: ATGGACTAGTAACTTATCGGAGTTCAAATCTATCCAATTTCACTTTGGGGgtaaaagctg ... atttgtccagGTTTCTGTTGGGTATTTCATCACTGACCTTGCTATGATATTATGGGCTTAT