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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGGCAGCTGAAGAGCATGGAGATTTGGCTCTTATCACTGTTGAAGCTCCCCAGGTTACTGTGAGTGAAAAAGTATCATTGAGGCCACCAATGTTGCAGgtatgacattcagtgtgatggatgcttttagtgcccattttctttattgatatgctgttttctgacttcgtaagtgttatctgaagttagtgtataataa...

Basic information

species Zea mays
transcript GRMZM5G824843_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G824843_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g46510.2 (Oryza sativa), 5'ss of exon 15
TCGGGCAGCTGAAGAGCATGGAGATTTGGCTCTTATCACTGTTGAAGCTCCCCAGGTTACTGTGAGTGAAAAAGTATCATTGAGGCCACCAATGTTGCAGgtatgacattcagtgtgatggatgcttttagtgcccattttctttat-tgatatgctgttttctgacttcgtaagtgttatctgaagttagtgtataataa-
|||||| |||| |||||||||||||||||||||||| || |||||||  ||| ||  |||      ||| ||| || | || || || |||||||||||||||     |||    |  | |||   ||| || ||  || |  |||| |  | |  | |||| ||   |  ||| |||||| |||||| ||| |  | ||| 
TCGGGCGGCTGCAGAGCATGGAGATTTGGCTCTTATTACAGTTGAAGGCCCCAAGACTACCACTTCTGAGAAAATAGCTTTAAGACCTCCAATGTTGCAGgtacagttttctacattcttgatttcttttgtaccgtttctacttatatactgttttcttttgtgttcttctaa-tgttatttgaagtcagttt-cagtaat

upper sequence: GRMZM5G824843_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA03G38530.1 (Glycine max), 5'ss of exon 15
TCGGGCAGCTGAAGAGCATGGAGATTTGGCTCTTATCACTGTTGAAGCTCCCCAGGTTACTGTGAGTGAAAAAGTATCATTGAGGCCACCAATGTTGCAGgt----atgacattcagtgtgatggatgcttttagtgcccattttctttattgatatgctgttttctgacttcgtaagtgtta-tctgaagttagtgtataataa
  | ||||  | |||||||||||| || || || || ||||| |||| |  ||||  | |   |   |||| | || |||||||||||||||||||||||||    |   | ||||   |  |       | |       |||  |   ||| |  |||  ||||     ||| | ||  ||| | |   |||  || |||    
AAGAGCAGTGGCAGAGCATGGAGAGTTAGCACTAATTACTGTAGAAGGTATCCAGTCTGCCAAGGAAGAAAGAATAGCATTGAGGCCACCAATGTTGCAGgttaccaaagctttcaactttgtat-catctatgaaaatgattgccaacattca-gtgccatttttgtctttcctcagatttaatattttgtttctggatat---

upper sequence: GRMZM5G824843_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA19G41130.2 (Glycine max), 5'ss of exon 11
TCGGGCAGCTGAAGAGCATGGAGATTTGGCTCTTATCACTGTTGAAGCTCCCCAGGTTACTGTGAGTGAAAAAGTATCATTGAGGCCACCAATGTTGCAGgt----atgacattcagtgtgatggatgcttttagtgcccattttctttattgatatgctgttttctgacttcgtaagtgttatctgaagttagtgtataataa
  | ||||  | |||||||||||| || || || || ||||| |||| |  ||||  | |   |   |||| | || |||||||||||||||||||||||||    |   | ||||   |  |       | | |     |||| |   ||| | |  || |||| |   | |  |  | | || |   |||  |  |||    
AAGAGCAGTCGCAGAGCATGGAGAGTTAGCACTAATTACTGTAGAAGGTATCCAGTCTGCCAAGGAAGAAAGAATAGCATTGAGGCCACCAATGTTGCAGgttaccaaagctttcaactttgtat-catctatggaaattatttccaacattcagagccttttttgtctttcctcagatttaatattttgtttcttgatat---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31364251|gb|CD448606.1|CD448606
EST:     CCCAGGTTACTGTGAGTGAAAAAGTATCATTGAGGCCACCAATGTTGCAG                         GTTGTTCGTTTAGCCTCCTTTCAGTACGCTCCATCGATACCACCATTTATA
genomic: CCCAGGTTACTGTGAGTGAAAAAGTATCATTGAGGCCACCAATGTTGCAGgtatgacatt ... tctgttccagGTTGTTCGTTTAGCCTCCTTTCAGTACGCTCCATCGATACCACCATTTATA
EST: gi|211541873|gb|FL034149.1|FL034149
EST:     CCCAGGTTACTGTGAGTGAAAAAGTATCATTGAGGCCACCAATGTTGCAG                         GTTGTTCGTTTAGCCTCCTTTCAGTACGCTCCATCGATACCACCATTTATA
genomic: CCCAGGTTACTGTGAGTGAAAAAGTATCATTGAGGCCACCAATGTTGCAGgtatgacatt ... tctgttccagGTTGTTCGTTTAGCCTCCTTTCAGTACGCTCCATCGATACCACCATTTATA
EST: gi|211541872|gb|FL034148.1|FL034148
EST:     CCCAGGTTACTGTGAGTGAAAAAGTATCATTGAGGCCACCAATGTTGCAG                         GTTGTTCGTTTAGCCTCCTTTCAGTACGCTCCATCGATACCACCATTTATA
genomic: CCCAGGTTACTGTGAGTGAAAAAGTATCATTGAGGCCACCAATGTTGCAGgtatgacatt ... tctgttccagGTTGTTCGTTTAGCCTCCTTTCAGTACGCTCCATCGATACCACCATTTATA
EST: gi|211538865|gb|FL034144.1|FL034144
EST:     CCCAGGTTACTGTGAGTGAAAAAGTATCATTGAGGCCACCAATGTTGCAG                         GTTGTTCGTTTAGCCTCCTTTCAGTACGCTCCATCGATACCACCATTTATA
genomic: CCCAGGTTACTGTGAGTGAAAAAGTATCATTGAGGCCACCAATGTTGCAGgtatgacatt ... tctgttccagGTTGTTCGTTTAGCCTCCTTTCAGTACGCTCCATCGATACCACCATTTATA
EST: gi|211541869|gb|FL034145.1|FL034145
EST:     CCCAGGTTACTGTGAGTGAAAAAGTATCATTGAGGCCACCAATGTTGCAG                         GTTGTTCGTTTAGCCTCCTTTCAGTACGCTCCATCGATACCACCATTTATA
genomic: CCCAGGTTACTGTGAGTGAAAAAGTATCATTGAGGCCACCAATGTTGCAGgtatgacatt ... tctgttccagGTTGTTCGTTTAGCCTCCTTTCAGTACGCTCCATCGATACCACCATTTATA