1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTGCCAATGGTGTAGTCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtatctaagtttttgaatttctcttttgccacattctgacctttctccatgacgagtgctaaacagatacctgcatgaaaaacttttcag
species | Zea mays |
transcript | GRMZM5G824831_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTSGAGTTGTCTATAGEST: gi|71445140|gb|DR826190.1|DR826190
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|211252219|gb|FK953400.1|FK953400
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|211156519|gb|FL164233.1|FL164233
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|211264908|gb|FL208724.1|FL208724
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCAEST: gi|33098530|gb|CF058490.1|CF058490
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCA
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|211156514|gb|FL164228.1|FL164228
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|211153314|gb|FL164202.1|FL164202
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|211252212|gb|FK953393.1|FK953393
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|74241051|gb|DT648965.1|DT648965
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|6952542|gb|AW424610.1|AW424610
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|211264911|gb|FL208727.1|FL208727
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTEST: gi|148956338|gb|EC902144.2|EC902144
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGT
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|211264912|gb|FL208728.1|FL208728
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAAATATTGGAGTTGTCTATAGTGGEST: gi|113698232|gb|DW851196.1|DW851196
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAA-TATTGGAGTTGTCTATAGTGG
EST: CCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTG-CTAATAGTGGEST: gi|148931204|gb|EC873960.2|EC873960
genomic: CCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTA-TAGTGG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|211264909|gb|FL208725.1|FL208725
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGA-GAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|148952476|gb|EC898302.2|EC898302
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|211156522|gb|FL164236.1|FL164236
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGNGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|211264913|gb|FL208729.1|FL208729
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGTGGGEST: gi|211264914|gb|FL208730.1|FL208730
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGTGGG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|149076954|gb|EE165611.2|EE165611
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|78112697|gb|DV531091.1|DV531091
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|211252214|gb|FK953395.1|FK953395
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|211154915|gb|FL164213.1|FL164213
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|211149323|gb|FL312581.1|FL312581
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|211252217|gb|FK953398.1|FK953398
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|148987620|gb|EE031494.2|EE031494
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|211154922|gb|FL164220.1|FL164220
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|211252215|gb|FK953396.1|FK953396
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|211156520|gb|FL164234.1|FL164234
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCNCTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GNGCAAAAGATTCAGGGACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|6194486|gb|AW146590.1|AW146590
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|33094853|gb|CF054847.1|CF054847
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCGCTAACACCTAATATTGGAGTTGTCTATAGEST: gi|32926059|gb|CF030871.1|CF030871
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|91875485|gb|EB405442.1|EB405442
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|71447361|gb|DR828411.1|DR828411
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|211158115|gb|FL164244.1|FL164244
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|211252210|gb|FK953391.1|FK953391
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|32795340|gb|CD947576.1|CD947576
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|211321302|gb|FL273340.1|FL273340
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAAAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|211153313|gb|FL164201.1|FL164201
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGEST: gi|211153309|gb|FL164197.1|FL164197
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
EST: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
genomic: TCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtat ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCCAATGGTGTAGTCATTGCCACTGAGAAGAAGCTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtatctaagtttttgaatttctcttttgccacattctgacctttctccatgacgagtgctaaacagatacctgcatgaaaaacttttcag
- - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - AGTGGA