1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTACCACAAGTAACAGAAGAAGCTGCACAAGCTGTTGTAGAGCTCTATCCAACCCCTTTGTTACTGGCAAAGGCATACTCTATACTTgtaagtcctctgcctagttttttttgtttccgtttaaatatacaggtcacaacagttcctcatgttcggaacaaattccatgccctttgtgttgcagtgctacagtactgtgtcttacaaaatacttttttttgagacatctaagctcatgtccagattggcaatgttgtag
species | Zea mays |
transcript | GRMZM5G822970_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TAGAGCTCTATCCAACCCCTTTGTTACTGGCAAAGGCATACTCTATACTT GGTGGCGATACCTCTGCACAAGAGAAGATGCTAAAGAAGAAGAACGAGATGEST: gi|211103553|gb|FL442493.1|FL442493
genomic: TAGAGCTCTATCCAACCCCTTTGTTACTGGCAAAGGCATACTCTATACTTgtaagtcctc ... aatgttgtagGGTGGCGATACCTCTGCACAAGAGAAGATGCTAAAGAAGAAGAACGAGATG
EST: TAGAGCTCTATCCAACCCCTTTGTTACTGGCAAAGGCATACTCTATACTT GGTGGCGATACCTCTGCACAAGAGAAGATGCTAAAGAAGAAGAACGAGATGEST: gi|78078421|gb|DV506835.1|DV506835
genomic: TAGAGCTCTATCCAACCCCTTTGTTACTGGCAAAGGCATACTCTATACTTgtaagtcctc ... aatgttgtagGGTGGCGATACCTCTGCACAAGAGAAGATGCTAAAGAAGAAGAACGAGATG
EST: TAGAGCTCTATCCAACCCCTTTGTTACTGGCAAAGGCATACTCTATACTT GGTGGCGATACCTCTGCACAAGAGAAGATGCTAAAGAAGAAGAACGAGATGEST: gi|60344662|gb|DN211635.1|DN211635
genomic: TAGAGCTCTATCCAACCCCTTTGTTACTGGCAAAGGCATACTCTATACTTgtaagtcctc ... aatgttgtagGGTGGCGATACCTCTGCACAAGAGAAGATGCTAAAGAAGAAGAACGAGATG
EST: TAGAGCTCTATCCAACCCCTTTGTTACTGGCAAAGGCATACTCTATACTT GGTGGCGATACCTCTGCACAAGAGAAGATGCTAAAGAAGAAGAACGAGATGEST: gi|78078420|gb|DV506834.1|DV506834
genomic: TAGAGCTCTATCCAACCCCTTTGTTACTGGCAAAGGCATACTCTATACTTgtaagtcctc ... aatgttgtagGGTGGCGATACCTCTGCACAAGAGAAGATGCTAAAGAAGAAGAACGAGATG
EST: TAGAGCTCTATCCAACCCCTTTGTTACTGGCAAAGGCATACTCTATACTT GGTGGGGATACCTCTGCCCAAGAGAAGATGCTAAAGAAGAAGAACGAGATG
genomic: TAGAGCTCTATCCAACCCCTTTGTTACTGGCAAAGGCATACTCTATACTTgtaagtcctc ... aatgttgtagGGTGGCGATACCTCTGCACAAGAGAAGATGCTAAAGAAGAAGAACGAGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACCACAAGTAACAGAAGAAGCTGCACAAGCTGTTGTAGAGCTCTATCCAACCCCTTTGTTACTGGCAAAGGCATACTCTATACTTgtaagtcctctgcctagttttttttgtttccgtttaaatatacaggtcacaacagttcctcatgttcggaacaaattccatgccctttgtgttgcagtgctacagtactgtgtcttacaaaatacttttttttgagacatctaagctcatgtccagattggcaatgttgtag
- - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG