Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGCTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAGgttactttgaccaccggaactcctctgtgtcacgtttcttgtcctgctgtttccctttccctgaactgaactggagccgtcgtcccgatctctgcag

Basic information

species Zea mays
transcript GRMZM5G822098_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G822098_T05 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os10g35644.2 (Oryza sativa), 5'ss of exon 4
GTGGGCTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAGgttactttgaccaccggaactcctctgtgtcacgtttcttgtcctgctgtttccctttccctgaactgaactggagccgtcgtcccgatctctgcag
||||||||| || |||||||||||||| | ||||||||||||||| || |||||||| ||   |      ||| | ||||| ||    ||||   ||  |||| | ||| ||| |         | ||      |   || ||||       
GTGGGCTGCTAGAGTGCTGGTGAACAGTGCCGAAGCCTGCCGGCATGGTCGCAAGgtgacaccg------ggatcccctctctggtttgttt---gtgatgctatgtccatttgc---------attgatattattaccctgatcag-----

upper sequence: GRMZM5G822098_T05 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os10g35644.1 (Oryza sativa), 5'ss of exon 4
GTGGGCTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAGgttactttgac-caccggaactcctctgtgtcacgtttcttgtcctgctgtttccctttccctgaactgaactggagccgtcgtcccgatctctgcag
||||||||| || |||||||||||||| | ||||||||||||||| || |||||||| ||   |     ||    ||  | ||| |    |    |||||   ||  |   | |   |   |||| |  | ||| | |||   ||  ||| ||
GTGGGCTGCTAGAGTGCTGGTGAACAGTGCCGAAGCCTGCCGGCATGGTCGCAAGgtgacaccgggatcccctctctggtttgtttgtgatgctatgtccatttgcattgatattattaccctgatc-agtgccattgtc---attcctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211326786|gb|FL341537.1|FL341537
EST:     CTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACS-C-GCAAG                         GAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCAAAG
genomic: CTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAGgttactttga ... atctctgcagGAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCAAAG
EST: gi|148990367|gb|EE031933.2|EE031933
EST:     CTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAG                         GAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCAAAG
genomic: CTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAGgttactttga ... atctctgcagGAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCAAAG
EST: gi|94472889|gb|EB701847.1|EB701847
EST:     CTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAG                         GAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCAAAG
genomic: CTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAGgttactttga ... atctctgcagGAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCAAAG
EST: gi|211409814|gb|FL346481.1|FL346481
EST:     CTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCMAG                         GAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCA
genomic: CTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAGgttactttga ... atctctgcagGAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCA
EST: gi|78116852|gb|DV535239.1|DV535239
EST:     CTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAG                         GAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCAAAG
genomic: CTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAGgttactttga ... atctctgcagGAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCAAAG
EST: gi|101391075|gb|EB817471.1|EB817471
EST:     CTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAG                         GAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCAAAG
genomic: CTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAGgttactttga ... atctctgcagGAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCAAAG
EST: gi|76292228|gb|DV031796.1|DV031796
EST:     TGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGNCA-G                         GAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCAAAG
genomic: TGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCG-CAAGgttactttga ... atctctgcagGAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCAAAG