Sequence
atgc intronic sequence ATGC exonic sequenceAGATGATGTTGTGCACTTGAATGGTCACATTGCTGGTTTAGAACCTATGAATTTCATAACATTTGCATCACCACATTTGGGTTCAAGTGGAAACAAACAGgtaagacagacctcttttgctgtttaatgaaaaagagttatatcagtgcgtttattctttcttatgttaacttcacatggctacccagtaccctctaact...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G820727_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os08g34750.1 (Oryza sativa), 5'ss of exon 4
AGATGATGTTGTGCACTTGAATGGTCACATTGCTGGTTTAGAACCTATGAATTTCATAACATTTGCATCACCACATTTGGGTTCAAGTGGAAACAAACAGgtaagacagacctcttttgctgtttaatgaaaaagagttatatcagt--gcgtttattctttcttatgttaacttcacatggctacccagt-accctctaact
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AGATGAAGGTGAGCGCTTGGAGGGTTTCATTGCTGGCTTAGAACCTATGAATTTTATAACCTTTGCCTCACCGCATCTTGGTTCAAGTGGAAATAAACAGgtaagactaatatcctttattgtttat---aaactagacagatcagttaaccatctctttctctttttttaactttgcataactacccacttaagttgcctct
upper sequence: GRMZM5G820727_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA06G25620.1 (Glycine max), 5'ss of exon 5
AGATGATGTTGTGCACTTGAATGGTCACATTGCTGGTTTAGAACCTATGAATTTCATAACATTTGCATCACCACATTTGGGTTCAAGTGGAAACAAACAGgtaagacagacctcttttgctgtttaatgaaaaagagttatatcagtgcgtttattctttcttatgttaacttcacatggct-acccagtaccctctaact-------
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ATTCCTTGAACAGAGTTATGAAGGCAAAATTGCTGGTTTAGAGCCCATGAACTTCATAACATTTGCAACACCACATCTTGGTTCAAGAGGAAATAAACAGgtag-------ctgcttaagtttgctatgaacagtagctgtaatgttctgtgc-ctgttatttctctttacttcatttatcagacttaaaatcttttgacatttcggt
upper sequence: GRMZM5G820727_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA04G20400.2 (Glycine max), 5'ss of exon 4
AGATGATGTTGTGCACTTGAATGGTCACATTGCTGGTTTAGAACCTATGAATTTCATAACATTTGCATCACCACATTTGGGTTCAAGTGGAAACAAACAGgtaagacagacctcttttgctgtttaatgaaaaagagttatatcagtgcgtttattctttcttatgttaacttcacatggct-acccagtaccctctaact-----
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ATTCCTTGAACAGAGTTATGAAGCCAAGATTGCTGGTTTAGAGCCCATGAACTTTATAACATTTGCAACACCACATCTCGGTTCAAGAGGAAATAAACAGgtagctgaag-----tttgctatgaacagtagctgtaatgt-tctttgtgcctgttgtttcacttaactacttcaattatcagacataaaatcttttggcattttg
upper sequence: GRMZM5G820727_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv11s0052g01660.t01 (Vitis vinifera), 5'ss of exon 4
AGATGATGTTGTGCACTTGAATGGTCACATTGCTGGTTTAGAACCTATGAATTTCATAACATTTGCATCACCACATTTGGGTTCAAGTGGAAACAAACAGgtaagacagacct-cttttgctgtttaatgaaaaagagttatatcagtgcgtttattctttcttatgttaacttcacatggctacccagtaccctctaact---
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AAGCCTTGAGCAACCTTATGAGGATAGAATTGCTGGACTGGAACCCATGAACTTTATAACATTTGCGACACCACATCTTGGTTCAAGGGGACACAAACAGgtagattaagtatgctcttgctgatt--tgaggattatttg-atcaat-cttctgtttgtcataatttctaaggcatccattcttccttctttattctgttagaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|108824145|gb|EC278153.1|EC278153EST: ATTTCATAACATTTGCATCACCACATTTGGGTTCAAGTGGAAACAAACAG ATTCTTCCACCAGCTACCTTTTTTATGTGGCCTTCCTTTCCTTGAGCGAAG
genomic: ATTTCATAACATTTGCATCACCACATTTGGGTTCAAGTGGAAACAAACAGgtaagacaga ... tcatgttcagATTCTTCCACCAGCTACCTTTTTTATGTGGCCTTCCTTTCCTTGAGCGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGATGATGTTGTGCACTTGAATGGTCACATTGCTGGTTTAGAACCTATGAATTTCATAACATTTGCATCACCACATTTGGGTTCAAGTGGAAACAAACAGgtaagacagacctcttttgctgtttaatgaaaaagagttatatcagtgcgtttattctttcttatgttaacttcacatggctacccagtaccctctaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgaaaaa