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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTATCAATGAAGCTCGCAACGGTAAACCCAAGGCTCGACCTCAACATAGAAGGGCTTCTATCGAAAGATgtatgatgcttcctgcaatcccattctctctctctctctctccatttgttatacatgtaagaatctaacaaagccatatattctttaccatcag

Basic information

species Zea mays
transcript GRMZM5G818643_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G818643_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os09g29830.1 (Oryza sativa), 5'ss of exon 6
TTCTTATCAATGAAGCTCGCAACGGTAAACCCAAGGCTCGACCTCAACATAGAAGGGCTTCTATCGAAAGATgtatgatgcttcctgcaatcccattctctctctctctctctccatttgttatacatgtaagaatctaacaaag-ccatatattctttaccatcag---
|||||||| |||||||| || || |||||||||||||| ||||||||||||||||||||||| || ||||| |||||      || ||||     | |   ||| || |   |||| |  || | | | || ||| ||||||| | |||| | ||  |   || |     
TTCTTATCGATGAAGCTTGCGACAGTAAACCCAAGGCTTGACCTCAACATAGAAGGGCTTCTTTCAAAAGACgtatg------ccagcaagt---tgcaacctcactttacttccactacttttccttctaggaagctaacaatgtccatttttttctcctcaactacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74233164|gb|DT641078.1|DT641078
EST:     CGGTAAACCCAAGGCTCGACCTCAACATAGAAGGGCTTCTATCGAAAGAT                         CTTCTCCGCTTCCCTGGCGTTCCTTCGTCTTCCCTTGGATTCTCCCCGGAA
genomic: CGGTAAACCCAAGGCTCGACCTCAACATAGAAGGGCTTCTATCGAAAGATgtatgatgct ... ttaccatcagCTTCTCCGCTTCCCTGGCGTTCCTTCGTCTTCCCTTGGATTCTCCCCGGAA
EST: gi|28361629|gb|CB239985.1|CB239985
EST:     TAAACCCAAGGCTCGACCTCAACACTAGAAGGGCTTCTATCGAAAGAT                         CTTCTCCGCTTCCCTGGCGTTCCTTCGTCTTCCCTTGGATTCTCCCCGGAA
genomic: TAAACCCAAGGCTCGACCTCAACA-TAGAAGGGCTTCTATCGAAAGATgtatgatgct ... ttaccatcagCTTCTCCGCTTCCCTGGCGTTCCTTCGTCTTCCCTTGGATTCTCCCCGGAA