Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTGCCCCGCCATGGCACAGCTCCTCTCCAATACCCTGTACTACAAGCGATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttgttgctttagtttctcccatttcttgtttgaacactcaaataagcatgttctgtacttgcacag

Basic information

species Zea mays
transcript GRMZM5G817037_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G817037_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os09g32800.1 (Oryza sativa), 5'ss of exon 4
AGCTGCCCCGCCATGGCACAGCTCCTCTCCAATACCCTGTACTACAAGCGATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaag--------------ttttgttgctttagtttctcccatttcttgtttgaacactcaaataagcatgttctgtacttgcacag----------------------------
|||||||| ||||||||||| || |||||||| || ||||||||||||||||||||||||||||| || |||||||| || ||||||||||| || || ||||||              || ||||  ||    || ||| |||| |  |||      |     |||||| |    | ||   | ||                            
AGCTGCCCTGCCATGGCACAACTGCTCTCCAACACTCTGTACTACAAGCGATTCTTCCCATATTATGCTTTCAATGTACTTGGTGGGCTTGATAGTGAAGgtaaggtgcagatttttatttatgttttttctccttttccaatttatgttttatgtgtttgttgaagcatatatatttctctaatagctaataaacacatatcttattttcacag

upper sequence: GRMZM5G817037_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os09g32800.2 (Oryza sativa), 5'ss of exon 4
AGCTGCCCCGCCATGGCACAGCTCCTCTCCAATACCCTGTACTACAAGCGATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaag--------------ttttgttgctttagtttctcccatttcttgtttgaacactcaaataagcatgttctgtacttgcacag----------------------------------
     ||| ||||||||||| || |||||||| || ||||||||||||||||||||||||||||| || |||||||| || ||||||||||| || || ||||||              || ||||  ||    || ||| |||| |  |||      |     |||||| |    | ||   | ||                                  
-----CCCTGCCATGGCACAACTGCTCTCCAACACTCTGTACTACAAGCGATTCTTCCCATATTATGCTTTCAATGTACTTGGTGGGCTTGATAGTGAAGGTAAGgtgcagatttttatttatgttttttctccttttccaatttatgttttatgtgtttgttgaagcatatatatttctctaatagctaataaacacatatcttattttcacagggaaag

upper sequence: GRMZM5G817037_T02 (Zea mays), 5'ss of exon 4
lower sequence: PP1S197_22V6.2 (Physcomitrella patens), 5'ss of exon 5
AGCTGCCCCGCCATGGCACAGCTCCTCTCCAATACCCTGTACTACAAGCGATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagt---tttgttgctttagtttctcccatttcttgtttgaa-cactcaaataagcatgttctgta--cttgcacag---------------------
||||| || || |||||||| || || || ||||| || ||||||||||||||||| || |||||||| || || ||||| |||||  | ||||  || |||| ||   | |||  | | |  | |    |  |  |  | | | |      || |   ||||  |||  |||  |  |                     
AGCTGTCCAGCTATGGCACAACTGCTTTCAAATACACTTTACTACAAGCGATTCTTTCCCTATTACGCATTTAACGTGCTTGGTGGCTTGGACAATGAAGgtacgtagatctgtctcgtcaaatacatttacgtggtactagtatcgtctgtattacattgtttggtaggctttgatcgacttcatattaggaatatcgg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78118564|gb|DV536948.1|DV536948
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|211289621|gb|FL244434.1|FL244434
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGT
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGT
EST: gi|211427863|gb|FL460787.1|FL460787
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|71433500|gb|DR814550.1|DR814550
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|12046567|gb|BF728706.1|BF728706
EST:     CTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: CTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|71433501|gb|DR814551.1|DR814551
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|211287471|gb|FL244413.1|FL244413
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTT
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTT
EST: gi|149105264|gb|EE290754.2|EE290754
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|32848620|gb|CD988301.1|CD988301
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|211291754|gb|FL244442.1|FL244442
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|211287474|gb|FL244416.1|FL244416
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTT
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTT
EST: gi|50339217|gb|CO534343.1|CO534343
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|211302464|gb|FL244526.1|FL244526
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTACGAGAGAACGG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|211289613|gb|FL244426.1|FL244426
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|211402444|gb|FL244547.1|FL244547
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAAGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|148953910|gb|EC899291.2|EC899291
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|211287479|gb|FL244421.1|FL244421
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTACGAGAGAA
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAA
EST: gi|211296046|gb|FL244480.1|FL244480
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|211302455|gb|FL244517.1|FL244517
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|211287475|gb|FL244417.1|FL244417
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|211300324|gb|FL244509.1|FL244509
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTACGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|211291764|gb|FL244452.1|FL244452
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTT
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTT
EST: gi|211296047|gb|FL244481.1|FL244481
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTACGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|211293897|gb|FL244457.1|FL244457
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|211399903|gb|FL244539.1|FL244539
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTACGAGAGAAC
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAAC
EST: gi|85152368|gb|DW587710.1|DW587710
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTT-CACCTATGATGCAGTAGGTTCCTATGAAAAAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|33942254|gb|CF348854.1|CF348854
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAAC
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTT-CACCTATGATGCAGTAGGTTCCTATGAGAGAAC
EST: gi|211287480|gb|FL244422.1|FL244422
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|211427862|gb|FL460786.1|FL460786
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|7009428|gb|AW455693.1|AW455693
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|33100971|gb|CF060931.1|CF060931
EST:     ATTCTTCCCATATTACGCCTTCAATGTACTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|18174710|gb|BM350098.1|BM350098
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|32801045|gb|CD953281.1|CD953281
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|211289618|gb|FL244431.1|FL244431
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTT
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTT
EST: gi|32858194|gb|CD997875.1|CD997875
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|211289627|gb|FL244440.1|FL244440
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GRAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAG
EST: gi|148965092|gb|EE015909.2|EE015909
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|31352578|gb|CD436935.1|CD436935
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTACGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|5456196|gb|AI833886.1|AI833886
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|211293905|gb|FL244465.1|FL244465
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAG
EST: gi|211302456|gb|FL244518.1|FL244518
EST:     ATTCTTCCCATATTACGCCTTMAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGA
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGA
EST: gi|211399904|gb|FL244540.1|FL244540
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTACGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|149105265|gb|EE290755.2|EE290755
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|211293898|gb|FL244458.1|FL244458
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTACGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|32859552|gb|CD999233.1|CD999233
EST:     CTTCCCATATNNNTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: CTTCCCATAT---TACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|148930814|gb|EC873185.2|EC873185
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|91868767|gb|EB400150.1|EB400150
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|32858122|gb|CD997803.1|CD997803
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|211296045|gb|FL244479.1|FL244479
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|71433723|gb|DR814773.1|DR814773
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|71316983|gb|DR795175.1|DR795175
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGGAAGGATGGCGTTT-CACCTATG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATG-CGTTTTCACCTATG
EST: gi|211291765|gb|FL244453.1|FL244453
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|211300317|gb|FL244502.1|FL244502
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|148965093|gb|EE015910.2|EE015910
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|211298175|gb|FL244487.1|FL244487
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|211289616|gb|FL244429.1|FL244429
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTT
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTT
EST: gi|31351401|gb|CD435758.1|CD435758
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTACGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|211289614|gb|FL244427.1|FL244427
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG
EST: gi|31356308|gb|CD440665.1|CD440665
EST:     ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGG                         GGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTACGAGAGAACCG
genomic: ATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 280

AGCTGCCCCGCCATGGCACAGCTCCTCTCCAATACCCTGTACTACAAGCGATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCGGTTACAGTGCTCAGGGAACGGGATCTACTTTGATCATGCCAGTCCTGGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 371

AGCTGCCCCGCCATGGCACAGCTCCTCTCCAATACCCTGTACTACAAGCGATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCGGTTACAGTGCTCAGGGAACGGGATCTACTTTGATCATGCCAGTCCTGGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 347

AGCTGCCCCGCCATGGCACAGCTCCTCTCCAATACCCTGTACTACAAGCGATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCGGTTACAGTGCTCAGGGAACGGGATCTACTTTGATCATGCCAGTCCTGGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 220

AGCTGCCCCGCCATGGCACAGCTCCTCTCCAATACCCTGTACTACAAGCGATTCTTCCCATATTACGCCTTCAATGTGCTCGGTGGGCTTGACAGCGAGGgtaagttttg ... acttgcacagGGAAAGGATGCGTTTTCACCTATGATGCAGTAGGTTCCTATGAGAGAACCGGTTACAGTGCTCAGGGAACGGGATCTACTTTGATCATGCCAGTCCTGGA