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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTGATAGAGCGTTGTCTACAGCTCTACATGAACAAAGGAGAAGTTGTTAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAGgtaatgtgctcatgttctgctggtgatgctgtttatatgttttttatattcactagtttcaccccccccccacacacacaatgggcttttgatgggacat...

Basic information

species Zea mays
transcript GRMZM5G816784_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G816784_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g12080.3 (Oryza sativa), 5'ss of exon 4
AATTTGATAGAGCGTTGTCTACAGCTCTACATGAACAAAGGAGAAGTTGTTAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAGgtaatgtgctcatgttctgctggtgatgctgtttatatgttttttatattcactagtttcaccccccccccacacacacaatgggcttttgatgggacat----
|||||||||||||| ||||||||||| ||||||||||||||||| |||||||| || |||||||||||||| |||||||||||||| ||||||||||||||| ||||   ||   || | || ||||| | || || |   ||| |   |  |      ||| | |           |   |  | ||||    | || |    
AATTTGATAGAGCGCTGTCTACAGCTATACATGAACAAAGGAGAGGTTGTTAGGACGCTTTCTACTCGTGCAAGAATAGAACCTGGTTTCACTACTTTAGgtgatgt-tgcaaaatcagttgatgatgatattaatgt---tttgagggtttcataccgcactcactagttttgtgtaatctttgttttttcccgtacttattg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149000463|gb|EE037638.2|EE037638
EST:     AGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTTCACTACTTTAG                         TATGGCAGAAACTTGAAGAAGAAAACTCCGAGTTCTTTAGGGCTTACTATA
genomic: AGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTT-CACTACTTTAGgtaatgtgct ... ttgtgttcagTATGGCAGAAACTTGAAGAAGAAAACTCCGAGTTCTTTAGGGCTTACTATA
EST: gi|211440032|gb|FK972557.1|FK972557
EST:     TAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAG                         TATGGCAGAAACTTGAAGAAGAAAACTCTGAGTTCTTTAGGGCTTACTATA
genomic: TAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAGgtaatgtgct ... ttgtgttcagTATGGCAGAAACTTGAAGAAGAAAACTCCGAGTTCTTTAGGGCTTACTATA
EST: gi|74236845|gb|DT644759.1|DT644759
EST:     TAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAG                         TATGGCAGAAACTTGAAGAAGAAAACTCCGAGTTCTTTAGGGCTTACTATA
genomic: TAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAGgtaatgtgct ... ttgtgttcagTATGGCAGAAACTTGAAGAAGAAAACTCCGAGTTCTTTAGGGCTTACTATA
EST: gi|211440029|gb|FK972554.1|FK972554
EST:     TAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAG                         TATGGCAGAAAACTTGAAGAAGAAAACTCTTGAGTTCTTTAGGGGCTTACT
genomic: TAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAGgtaatgtgct ... ttgtgttcagTATGGCAGAAA-CTTGAAGAAGAAAACTCC-GAGTTCTTTAGGG-CTTACT