Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGCTCAATGGCAATCATTTGACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaatatcaatttcaaatgtttagcattctattctctccagattagtgctcaatttgacaatctacccaccttgctctttcag

Basic information

species Zea mays
transcript GRMZM5G815009_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G815009_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g59440.2 (Oryza sativa), 5'ss of exon 4
GCGGCTCAATGGCAATCATTTGACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaatatcaatttcaaatgtttagcattctattctctccagattagtgctcaatttgacaa-tctacccaccttgctctttcag
|||||||||||||||||  ||||||||||| ||||||||||||||  | |||||||||||||| |||||||||||||||     ||||| |   || | ||   |       || || |  | |  | ||| ||| || | |  || ||||| ||||||||
GCGGCTCAATGGCAATCGCTTGACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagta-----caattcctggtgctgagtgcttgg----ctgcaaac-aatcttgaatgtgataaattttacccccttgttctttcag

upper sequence: GRMZM5G815009_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv06s0009g01210.t01 (Vitis vinifera), 5'ss of exon 4
GCGGCTCAATGGCAATCATTTGACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaa----------ata-tcaatttcaaatgt-ttagca-ttctattctctccagattagtgctcaatttgacaatctacccaccttgctctttcag
 ||||| |||| |||||| || ||||| |  |||||||||||||||  ||| ||||| || |||||| ||||||||||            ||| | | |||  | ||  | ||   ||||||  |||    | | ||  |  | || | ||| ||   |  |||    |||||
ACGGCTTAATGACAATCAGTTAACTGGTCAAATCCCAAGGGAACTTGTTGGTATATCAAGCCTCAAAATTGTgtaagtggttttgttcttatacttattttttagtgcatcagtgcttctatgatctgtttagttgtagtgcactt-ataatgtaaaaaatttgtgtattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|166697897|gb|EG182072.1|EG182072
EST:     GTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: GTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|149104284|gb|EE289722.2|EE289722
EST:     ACTGGGCCGATCCCAAAGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGGAC-AT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGG-ACCAT
EST: gi|89756077|gb|DY686250.1|DY686250
EST:     ACTGGGGCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|93284383|gb|EB676647.1|EB676647
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|91054725|gb|EB165143.1|EB165143
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|91051618|gb|EB162036.1|EB162036
EST:     CTGGGCCGATCCCCAAGG-AACTTTCTGGAATATCTAGTCCCAAAGGTGT                         CGATGTTTCAAGCAATGATTTATGTGG
genomic: CTGGGCCGATCCC-AAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGG
EST: gi|149101778|gb|EE287382.2|EE287382
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|149106063|gb|EE291719.2|EE291719
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|74240378|gb|DT648292.1|DT648292
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT