1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCATGGGACAGGTTCAGGTGCCACTGAAGGCAGTGCCGGGAGGGGTTTCAACAATGGCGGGTTCAGAAGGGATGGTGGCTTGCGGATGCAGAGGAGAGTGgtgagtacttattagaacaaagtgtggatgtcttgtggttttgctattcacggttatatgtcatcttgtggagcttaccttgtttcgtttggttatag
species | Zea mays |
transcript | GRMZM5G810275_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGAGGAGAGTG GACTATAATTCGCTGCCAGAGCCAGCTCCAAGGGAGCTTCCCAGGAATGAGEST: gi|60355550|gb|DN222523.1|DN222523
genomic: AGAGGAGAGTGgtgagtactt ... ttggttatagGACTATAATTCGCTGCCAGAGCCAGCTCCAAGGGAGCTTCCCAGGAATGAG
EST: AGGGATGGTGGCTTGCGGATGCAGAGGAGAGTG GACTATAATTCGCTGCCAGAGCCAGCTCCAAGGGAGCTTCCCAGGAATGAG
genomic: AGGGATGGTGGCTTGCGGATGCAGAGGAGAGTGgtgagtactt ... ttggttatagGACTATAATTCGCTGCCAGAGCCAGCTCCAAGGGAGCTTCCCAGGAATGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATGGGACAGGTTCAGGTGCCACTGAAGGCAGTGCCGGGAGGGGTTTCAACAATGGCGGGTTCAGAAGGGATGGTGGCTTGCGGATGCAGAGGAGAGTGgtgagtacttattagaacaaagtgtggatgtcttgtggttttgctattcacggttatatgtcatcttgtggagcttaccttgtttcgtttggttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA