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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCTGACTATAACTCAAAAGAAACCTTGGATGTTTTTCCCTGACATTATTCCACTAGGCCATCCTATATTTGATGTTATCGAGTCAACAGATCCAGAGgtaggtggatcaaatcttttgttgcaaagagaaaactgatctcttaaaattccgtcactagtttctattgaatgttcagcgaattagttaatagctttgt...

Basic information

species Zea mays
transcript GRMZM5G807767_T04
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G807767_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g50980.1 (Oryza sativa), 5'ss of exon 3
GATGCTGACTATAACTCAAAAGAAACCTTGGATGTTTTTCCCTGACATTATTCCACTAGGCCATCCTATATTTGATGTTATCGAGTCAACAGATCCAGAGgtaggtggatcaaatcttttgttgcaaagagaaaactgatctcttaaaattccgtcactagtttctattgaatgttcagcgaattagttaatagc-tttgt
|||||||||||||||||||||    ||||||||||||||||| ||||||||||||||||||||||| ||||||||  | || || ||||||||||| ||||||  |||| |   |||     |  ||  |    |     |  | || | |   |    | |    | |   ||||       ||    |  | |  || |
GATGCTGACTATAACTCAAAAACGCCCTTGGATGTTTTTCCCCGACATTATTCCACTAGGCCATCCCATATTTGACATCATTGAATCAACAGATCCTGAGgtaaatggagccc-tctaaccctctaattatggtatgttccagtgaagactgtatgtgcattccagagtttgtgttttttagtttctacagaatcacttat

upper sequence: GRMZM5G807767_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA15G16830.1 (Glycine max), 5'ss of exon 4
GATGCTGACTATAACTCAAAAGAAACCTTGGATGTTTTTCCCTGACATTATTCCACTAGGCCATCCTATATTTGATGTTATCGAGTCAACAGATCCAGAGgtaggtgga---------tcaaatcttttgtt---gcaaagagaaaactgatc-----tcttaaaattccgtcactagtttctat----tgaatgt-tcagcgaattagttaatagctttgt-------------------------------------------------------------------
|||| | || ||||   | |||   || ||||||||||||||||| || |||||  | |  ||||| ||||||||| ||||| | |||||| |||||||||||  |            | |  || ||||||      |||| | |||  ||      | ||    || | | |  | |   ||       ||||| ||| |   |   ||||  |  ||||                                                                   
GATGTTAACCATAAGCAAGAAGCTCCCGTGGATGTTTTTCCCTGATATAATTCCCTTGGATCATCCAATATTTGATATTATCAACTCAACAAATCCAGAGgtaattactattctcttctaagttcatttgttcataataagatataaccaattggttgttttcgcttttcatgataaatacatacgttaccaatgtgtcaccctttgttttaactgtgttgtacctgctacaaaagtaaaaaatgttctggttatctgcttaatgtaattgtgcaaatctttgtggcag

upper sequence: GRMZM5G807767_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA09G05510.1 (Glycine max), 5'ss of exon 4
GATGCTGACTATAACTCAAAAGAAACCTTGGATGTTTTTCCCTGACATTATTCCACTAGGCCATCCTATATTTGATGTTATCGAGTCAACAGATCCAGAGgtaggtg-gatcaaatct---tttgttgca----aagagaaaactgatctcttaaaattccgtcactagtttctattgaatgttcagcgaattagttaatagctttgt---------------------------------------------------------------------------------
|||| | || ||||   | |||   || ||||||||||||||||| || |||||  | |  ||||| ||||||||| ||||| | |||||| |||||||||||  |   |||   |||   ||  || ||    |||| | |||  || |  |    |    |||||  ||  |  | |||    |    |  | |  ||  |  | |                                                                                 
GATGTTAACCATAAGCAAGAAGCTCCCATGGATGTTTTTCCCTGATATAATTCCCTTGGATCATCCAATATTTGATATTATCAACTCAACAAATCCAGAGgtaattacaatctcttctaagttcatttcataataagatataaccaatttgcttggttgttttcactt-ttcatgataaatacatacattaccaatgtatcaccctttgttttaactattgtacctgctacaaaagtaaaaaatgttctggttatctgcttaatgtaattgtgcaaatctttgtggcag