1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCCCGTCGAGCTCCACATGGTCCACGCCAGCGACGACGGCAACGTCACCGTGGTGGCCATGCTCTACCGGTTTGGCAGGCCGGATCCTTTGCTCTGGCAGgtactgaatctaccatatgcattaatgcatcctcgtcgtcgtcgtcgttggcggcatagcatcttcgacgatagtaaccgccgactctgcgtttaaacttggtctgttcgcggacgacgcgcggcggcacag
species | Zea mays |
transcript | GRMZM5G807267_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGTGGCCATGCTCTACCGGTTTGGCAGGCCGGATCCTTTGCTCTGGCAG ATCCAGGACAAGCTGGCCGCGCTGCACGCGGAGGGCTGCAGAGCGGACAAGEST: gi|86469687|gb|DY236057.1|DY236057
genomic: TGGTGGCCATGCTCTACCGGTTTGGCAGGCCGGATCCTTTGCTCTGGCAGgtactgaatc ... ggcggcacagATCCAGGACAAGCTGGCCGCGCTGCACGCGGAGGGCTGCAGAGCGGACAAG
EST: TGGTGGCCATGCTCTACCGGTTTGGCAGGCCGGATCCTTTGCTCTGGCAG ATCCAGGACAAGCTGGCCGCGCTGCACGCGGAGGGCTGCAGAGCGGACAAGEST: gi|86474309|gb|DY240679.1|DY240679
genomic: TGGTGGCCATGCTCTACCGGTTTGGCAGGCCGGATCCTTTGCTCTGGCAGgtactgaatc ... ggcggcacagATCCAGGACAAGCTGGCCGCGCTGCACGCGGAGGGCTGCAGAGCGGACAAG
EST: TGGTGGCCATGCTCTACCGGTTTGGCAGGCCGGATCCTTTGCTCTGGCAG ATCCAGGACAAGCTGGCCGCGCTGCACGCGGAGGGCTGCAGAGCGGACAAGEST: gi|211385816|gb|FL436939.1|FL436939
genomic: TGGTGGCCATGCTCTACCGGTTTGGCAGGCCGGATCCTTTGCTCTGGCAGgtactgaatc ... ggcggcacagATCCAGGACAAGCTGGCCGCGCTGCACGCGGAGGGCTGCAGAGCGGACAAG
EST: TGGTGGCCATGCTCTACCGGTTTGGCAGGCCGGATCCTTTGCTCTGGCAG ATCCAGGACAAGCTGGCCGCGCTGCACGCGGAGGGTTGCAGAGCGGACAAGEST: gi|74239798|gb|DT647712.1|DT647712
genomic: TGGTGGCCATGCTCTACCGGTTTGGCAGGCCGGATCCTTTGCTCTGGCAGgtactgaatc ... ggcggcacagATCCAGGACAAGCTGGCCGCGCTGCACGCGGAGGGCTGCAGAGCGGACAAG
EST: TGGTGGCCATGCTCTACCGGTTTGGCAGGCCGGATCCTTTGTTCTGGCAG ATCCAGGACAAGCTGGCCGCGCTGCACGCGGAGGGCTGCAGAGCGGACAAGEST: gi|60346845|gb|DN213818.1|DN213818
genomic: TGGTGGCCATGCTCTACCGGTTTGGCAGGCCGGATCCTTTGCTCTGGCAGgtactgaatc ... ggcggcacagATCCAGGACAAGCTGGCCGCGCTGCACGCGGAGGGCTGCAGAGCGGACAAG
EST: TGGTGGCCATGCTCTACCGGTTTGGCAGGCCGGATCCTTTGCTCTGGCAG ATCCAGGACAAGCTGGCCGCGCTGCACGCGGAGGGCTGCAGAGCGGACAAGEST: gi|149095902|gb|EE181563.2|EE181563
genomic: TGGTGGCCATGCTCTACCGGTTTGGCAGGCCGGATCCTTTGCTCTGGCAGgtactgaatc ... ggcggcacagATCCAGGACAAGCTGGCCGCGCTGCACGCGGAGGGCTGCAGAGCGGACAAG
EST: TGGGGGCCATGCTTTCCCGGTTGGGCAGGCCGGATCCTTTGCTTTGGCAG ATCCAGGACAAGCTGGCCGCGCTGCACGCGGAGGGCTGCAGAGCGGACAAGEST: gi|91050066|gb|EB160484.1|EB160484
genomic: TGGTGGCCATGCTCTACCGGTTTGGCAGGCCGGATCCTTTGCTCTGGCAGgtactgaatc ... ggcggcacagATCCAGGACAAGCTGGCCGCGCTGCACGCGGAGGGCTGCAGAGCGGACAAG
EST: TGGTGGCCATGCTCTACCGGTTTGGCAGGCCGGATCCTTTGCTCTGGCAG ATCCAGGACAAGCTGGCCGCGCTGCACGCGGAGGGCTGCAGAGCGGACAAGEST: gi|211295581|gb|FL447840.1|FL447840
genomic: TGGTGGCCATGCTCTACCGGTTTGGCAGGCCGGATCCTTTGCTCTGGCAGgtactgaatc ... ggcggcacagATCCAGGACAAGCTGGCCGCGCTGCACGCGGAGGGCTGCAGAGCGGACAAG
EST: TGGTGGCCATGCTCTACCGGTTTGGCAGGCCGGATCCTTTGCTCTGGCAG ATCCAGGACAAGCTGGCCGCGCTGCACGCGGAGGGCTGCAGAGCGGACAAGEST: gi|89248779|gb|DY620565.1|DY620565
genomic: TGGTGGCCATGCTCTACCGGTTTGGCAGGCCGGATCCTTTGCTCTGGCAGgtactgaatc ... ggcggcacagATCCAGGACAAGCTGGCCGCGCTGCACGCGGAGGGCTGCAGAGCGGACAAG
EST: GCAGGCCGGATCCTTTGCTCTGGCAG ATCCAGGACAAGCTGGCCGCGCTGCACGCGGAGGGCTGCAGAGCGGACAAGEST: gi|211270664|gb|FL134955.1|FL134955
genomic: GCAGGCCGGATCCTTTGCTCTGGCAGgtactgaatc ... ggcggcacagATCCAGGACAAGCTGGCCGCGCTGCACGCGGAGGGCTGCAGAGCGGACAAG
EST: TGGTGGCCATGCTCTACCGGTTTGGCAGGCCGGATCCTTTGCTCTGGCAG ATCCAGGACAAGCTGGCCGCGCTGCACGCGGAGGGCTGCAGAGCGGACAAG
genomic: TGGTGGCCATGCTCTACCGGTTTGGCAGGCCGGATCCTTTGCTCTGGCAGgtactgaatc ... ggcggcacagATCCAGGACAAGCTGGCCGCGCTGCACGCGGAGGGCTGCAGAGCGGACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCCGTCGAGCTCCACATGGTCCACGCCAGCGACGACGGCAACGTCACCGTGGTGGCCATGCTCTACCGGTTTGGCAGGCCGGATCCTTTGCTCTGGCAGgtactgaatctaccatatgcattaatgcatcctcgtcgtcgtcgtcgttggcggcatagcatcttcgacgatagtaaccgccgactctgcgtttaaacttggtctgttcgcggacgacgcgcggcggcacag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG