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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGTGCATTCTGTATTTGGAAGCTAACACGAGGAAGCCACTGATCGCAACTACTGAAACACAATTGCTAGACCGTCATACATCTGCAATTATTGAGAAGgtgaccatttgcctttataatatatgttccttttatgcagcctgagcaagcatgcgaatttgtatgtttcttgttgggcacgatatccataaactgcaataatgctttactaacctgcttttgtatgttggtccttgtgtttgtggtgttttcag

Basic information

species Zea mays
transcript GRMZM2G704093_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G704093_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g57290.1 (Oryza sativa), 5'ss of exon 5
AAGGTGCATTCTGTATTTGGAAGCTAACACGAGGAAGCCACTGATCGCAACTACTGAAACACAATTGCTAGACCGTCATACATCTGCAATTATTGAGAAGgtgaccatttgcctttataatatatgttccttttatgcagcctgagcaagcatgcgaatttgtatgtttcttgttgggc-acgatatccataaactgcaataa------tgctttactaacctgcttttgtatgttggtccttgtgtttgtggtgttttcag--------------------------------------
|||||| ||||| ||||||||||||||||| |||||||| || ||  || |||| ||||  |||||  |  | || || |||||||||||| ||||||||||||  || |||  ||| ||     |    | ||||   ||| ||  ||| ||| ||   || || ||||| ||||  | |  | ||| ||| |  | ||  |      | |||||  ||  |  || | | |||||| |  |   || ||   |                                             
AAGGTGTATTCTATATTTGGAAGCTAACACTAGGAAGCCGCTTATAACAGCTACAGAAAAGCAATTATTGCAGCGGCACACATCTGCAATTCTTGAGAAGgtgattatctgctcttacaactgtaggatttgttatctggccagaataagaatgtgatggtgcat-tttctagttgacccattagatcaatatatagaaaagaggtgtttactttatcaatata-ttatatttgttggccactaatttagtttagccactgtctcattcatgacctggcatatgatgttttactgttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31353844|gb|CD438201.1|CD438201
EST:     CTACTGAAACACAATTGCTAGACCGTCATACATCTGCAATTATTGAGAAG                         GGGTTCGCAATGCTCATGGATGCAAATCGTATAAATGACCTCTTGAGGATG
genomic: CTACTGAAACACAATTGCTAGACCGTCATACATCTGCAATTATTGAGAAGgtgaccattt ... gtgttttcagGGGTTCGCAATGCTCATGGATGCAAATCGTATAAATGACCTCTTGAGGATG