Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAAGAGAATGTACAAGCATCCTGCAAAATCATTACCCTGAGAGGCTGGCCATTGCATTTCTGTTGAATCCCCCAAAAGTATTCGAAGCCTTTTACAGGgtaaaggcttttaaacctcctgcttttgtaaatgttatatttgtgtttgatttacttcacaaagattcaaaatctatttgtagaatcgatgcataaaattatgctcctgttttgatatccctatccttactcaagttttccaaattcttacag

Basic information

species Zea mays
transcript GRMZM2G704053_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G704053_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g51430.1 (Oryza sativa), 5'ss of exon 5
TGCAAGAGAATGTACAAGCATCCTGCAAAATCATTACCCTGAGAGGCTGGCCATTGCATTTCTGTTGAATCCCCCAAAAGTATTCGAAGCCTTTTACAGGgtaaaggcttttaaacctcctgcttttgtaaatgttatatttgtgtttgatttacttcacaaagattcaaaatctatttgtagaatc-gatgcataaaattatgctcctgttttgatatccctatccttactcaagttttccaaattcttacag
||| ||||||||| |||  ||||||||||||||||||||||||||| |||| || |   | ||||| |||||||| |||||||| || || ||||  | |||| ||||| | |  | |  |  |     |||| || |  |  ||  |  | | || | || | |||  ||| | | || |||  |  ||| |     |           | |||||   | | |  | |||||| | || ||| | | | |||
TGCCAGAGAATGTGCAAATATCCTGCAAAATCATTACCCTGAGAGGTTGGCTATCGGGATCCTGTTTAATCCCCCCAAAGTATTTGAGGCTTTTTGGAAGgtacaggctctgattcgttttcataaatgaaatattgtgct-atggatattgttctactcacatattagaaaccaagttatagtgtttgatacgggggaaaggaa----atcttgat--tctttttgtaactcaaatgtttcaattgccttcag

upper sequence: GRMZM2G704053_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA17G36850.1 (Glycine max), 5'ss of exon 6
TGCAAGAGAATGTACAAGCATCCTGCAAAATCATTACCCTGAGAGGCTGGCCATTGCATTTCTGTTGAATCCCCCAAAAGTATTCGAAGCCTTTTACAGGgtaaaggcttttaaacctcctgcttttgtaaatgttatatttgtgtttgatttacttcacaaagattcaaaatctatttgtagaatcgatgcataaaattatgctcctgttttgatatccctatccttactcaagttttccaaattcttacag
 || |||||    |  | |||  |||| || ||||||||||||||||| |||||||||||||| |  || |||||   ||| || ||||| ||||  | |||        ||  |  || |  |   || |   ||| |||| ||    | |      |  || | | ||  |  || |   |  || ||  ||| |                                                        
AGCCAGAGAGACCATCAACATTTTGCAGAACCATTACCCTGAGAGGCTTGCCATTGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGgtttgttgactttga--tcataatcacgtga---ttaaatttctggcataatcgggaaaataatactgaagttacatgttatgcctctattgatacag-------------------------------------------------------

upper sequence: GRMZM2G704053_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA17G36850.2 (Glycine max), 5'ss of exon 4
TGCAAGAGAATGTACAAGCATCCTGCAAAATCATTACCCTGAGAGGCTGGCCATTGCATTTCTGTTGAATCCCCCAAAAGTATTCGAAGCCTTTTACAGGgtaaaggcttttaaacctcctgcttttgtaaatgttatatttgtgtttgatttacttcacaaagattcaaaatctatttgtagaatcgatgcataaaattatgctcctgttttgatatccctatccttactcaagttttccaaattcttacag
 || |||||    |  | |||  |||| || ||||||||||||||||| |||||||||||||| |  || |||||   ||| || ||||| ||||  | |||        ||  |  || |  |   || |   ||| |||| ||    | |      |  || | | ||  |  || |   |  || ||  ||| |                                                        
-GCCAGAGAGACCATCAACATTTTGCAGAACCATTACCCTGAGAGGCTTGCCATTGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGGtttgttgactttga--tcataatcacgtga---ttaaatttctggcataatcgggaaaataatactgaagttacatgttatgcctctattgatacaga------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67010300|gb|CO439049.1|CO439049
EST:     CCATTGCATTTCTGTTGAATCCCCCAAAAGTATTCGAAGCCTTTTACAGG                         GCTGTTAAATATTTCCTTGACCCAAGATCGATCGAGAAACTGAACTTCGTG
genomic: CCATTGCATTTCTGTTGAATCCCCCAAAAGTATTCGAAGCCTTTTACAGGgtaaaggctt ... attcttacagGCTGTTAAATATTTCCTTGACCCAAGATCGATCGAGAAACTGAACTTCGTG
EST: gi|211090147|gb|FL283409.1|FL283409
EST:     CCATTGCATTTCTGTTGAATCCCCCAAAAGTATTCGAAGCCTTTTACAGG                         GCTGTTAAATATTTCCTTGACCCAAGATCGATCGAGAAACTGAACTTCGTG
genomic: CCATTGCATTTCTGTTGAATCCCCCAAAAGTATTCGAAGCCTTTTACAGGgtaaaggctt ... attcttacagGCTGTTAAATATTTCCTTGACCCAAGATCGATCGAGAAACTGAACTTCGTG