1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAAAGAGAGTGCATTTCAAAAGAAGCTGAAGCTTTGTCACGAAAACAAAGAAAATTTGAATGAAATTGCTGATCAAGGAGAAAATGAAGCCAATGCAAAGgtaaacaatttggctgaaggcaagggatgtttttctgtgaaactgtgattgtacaaacagtttactacgcactttcaatctattattagttattttttat...
species | Zea mays |
transcript | GRMZM2G531738_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAAATTTGAATGAAATTGCTGATCAAGGAGAAAATGAAGCCAATGCAAAG CATTCTTCAGGGATTCTTACTCCGAGCAGTGTTGACAACCATAATACACATEST: gi|31351357|gb|CD435714.1|CD435714
genomic: AAAATTTGAATGAAATTGCTGATCAAGGAGAAAATGAAGCCAATGCAAAGgtaaacaatt ... tctggttcagCATTCTTCAGGGATTCTTACTCCGAGCAGTGTTGACAACCATAATACACAT
EST: AAAATTTGAATGAAATTGCTGATCAAGGAGAAAATGAAGCCAATGCAAAG CATTCTTCAGGGATTCTTACTCCGAGCAGTGTTGACAACCATAATACACATEST: gi|31352540|gb|CD436897.1|CD436897
genomic: AAAATTTGAATGAAATTGCTGATCAAGGAGAAAATGAAGCCAATGCAAAGgtaaacaatt ... tctggttcagCATTCTTCAGGGATTCTTACTCCGAGCAGTGTTGACAACCATAATACACAT
EST: AAAATTTGAATGAAATTGCTGATCAAGGAGAAAATGAAGCCCATGCAAAG CATTCTTCAGGGATTCTTACTCCGAGCAGTGTTGACAACCATAATACACATEST: gi|26558925|gb|CA831160.1|CA831160
genomic: AAAATTTGAATGAAATTGCTGATCAAGGAGAAAATGAAGCCAATGCAAAGgtaaacaatt ... tctggttcagCATTCTTCAGGGATTCTTACTCCGAGCAGTGTTGACAACCATAATACACAT
EST: AAAATTTGAATGAAATTGCTGATCAAGGAGAAAATGAAGCCAATGCAAAG CATTCTTCAGGGATTCTTACTCCGAGCAGTGTTGACAACCATAATACACAT
genomic: AAAATTTGAATGAAATTGCTGATCAAGGAGAAAATGAAGCCAATGCAAAGgtaaacaatt ... tctggttcagCATTCTTCAGGGATTCTTACTCCGAGCAGTGTTGACAACCATAATACACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGAGAGTGCATTTCAAAAGAAGCTGAAGCTTTGTCACGAAAACAAAGAAAATTTGAATGAAATTGCTGATCAAGGAGAAAATGAAGCCAATGCAAAGgtaaacaatttggctgaaggcaagggatgtttttctgtgaaactgtgattgtacaaacagtttactacgcactttcaatctattattagttattttttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG