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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTGgtaagtctgttctccttttttagccttgagtcatgatgccaagtactttgtcttgtactggaaacttgacgaattatatgtatataatgtacggagtaaa...

Basic information

species Zea mays
transcript GRMZM2G495626_T04
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G495626_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g67160.1 (Oryza sativa), 5'ss of exon 4
ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTGgtaagtctgttctccttttttagccttgagtcatgatgccaagtactttgtcttgtactggaaacttgacgaattatatgtatataatgtacggagtaaa--
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||| || ||||| ||||| |||||||| |||| | ||  | |   | |||      |  |  ||  | ||  | | || |  | |     ||||   | | |  |  || ||| ||  |    |  ||   
ATTGTGACTCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGATCAACACATTACTCAACCGGTGTTGACATTTGGTCCGTTGGTTGCATCTTCGgtatg-ctccttttgatctttgttacggctttgtgggggcactt-cattcttatatttgaaaaaccaaaagcacaacctggatacaacttttaaacaaacgc

upper sequence: GRMZM2G495626_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA07G02400.1 (Glycine max), 5'ss of exon 1
------ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTGgtaagtctgttctccttttttagccttgagtcatgatgccaagtacttt----gtcttgtactggaaacttgacgaattatatgtatataatgtacggagtaaa
      || || || || |||||| | || || || ||| | |||||  | || |||||||| ||||| |||||||| ||||||||||| |||||||||||| |||| || | || | | |  |  |   ||   || | || ||||||    |||||    |  |   |||   ||||   | |  ||  |  | ||| |  |
CACGAGATCGTTACTCTCTGGTACCGTGCCCCCGAGGTTCTCCTTGGCTCTACCCATTACTCCACTGGGGTTGATATCTGGTCTGTTGGCTGCATCTTTGgtcagtcagtccaccctctctctctctc--tctctattctaattactttttgagtctttggatcaatgtttgcaaaattgattttgaat--ttaatggatttta

upper sequence: GRMZM2G495626_T03 (Zea mays), 5'ss of exon 4
lower sequence: AT3G54180.1 (Arabidopsis thaliana), 5'ss of exon 1
------ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTGgtaagt-----ctgttctccttttttagccttgagtcatgatgccaagtactttgtcttgtactggaaacttgacgaattatatgtatataatgtacggagtaaa
      ||||| || |||||||| ||||||||||||||| | |||||| | || ||||| |||||||| ||||| |||||||||||||| || ||||||||| |||     |  || | ||||| |    |||| |     |  |    |  |  | ||||| |       |  | |  | |   | | ||  |           
CATGAGATTGTTACTCTTTGGTATAGAGCTCCTGAAGTTCTTCTTGGATCTACTCATTATTCAACTGGTGTTGACATGTGGTCTGTTGGTTGTATCTTTGgttagtagtctcaattatgcttttatgtttttgaattcgtctctctgcgatgtgattttgtatttatgctgtttcaatctttgaatttgtatag-----------

upper sequence: GRMZM2G495626_T03 (Zea mays), 5'ss of exon 4
lower sequence: AT2G38620.1 (Arabidopsis thaliana), 5'ss of exon 1
------ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTGgtaagtctgttctccttttttagccttgagtcatgatgccaagtactttgtcttgtactggaaacttgacgaattatatgtatataatgtacggagtaaa
      ||||| || |||||||| |||||||||||||||||||||||  | || |||||||| ||||  |||||||| |||||||||||||||||||||||| |||          | | |  | || | |  |  |      |||| | |    ||||| |   ||  | | || | ||||                  
CATGAGATTGTTACTCTTTGGTATAGAGCTCCTGAAGTTTTGCTTGGTTCTACTCATTACTCTACTGCTGTTGATATTTGGTCTGTTGGATGCATCTTTGgttagtaatcagctactatgtctcttttaatggtcttttgttctactgtttggattactg-atgtttccccatttttttgtag-----------------

upper sequence: GRMZM2G495626_T03 (Zea mays), 5'ss of exon 4
lower sequence: Vv08s0056g00210.t01 (Vitis vinifera), 5'ss of exon 2
ATTGTGACCCTTTGGTACAGAGCTCCTGAAGTTTTGCTTGGAGCAACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTGgtaagtctgttctcctttt-ttagccttgagtcatgatgccaagtactttgtcttgtactggaa-acttgacgaattatatgtatataatgtacggagtaaa--
||||| || || |||||||||||||| || || ||||||||  | ||||||||||| || || || ||||||||||||||||||||||| ||||||||  ||    |  || |  ||    ||  ||||    ||   |  ||  | |   |       | ||    |||  |     |   || || |   |  |  
ATTGTCACGCTGTGGTACAGAGCTCCAGAGGTGTTGCTTGGCTCTACACATTACTCTACCGGTGTGGATATGTGGTCTGTTGGATGCATTTTTGgtaaagctcaattaattctactatttatgcttcat----ccgtatgtttcttttcacaaaaattcaattagtaaatcctgatcttcggatttaggttatggatg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149101462|gb|EE187582.2|EE187582
EST:     AACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTG                         CTGAAATGGCCCGACGGCAGGCTCTCTTTCCTGGTGACTCGGAGTTGCAAC
genomic: AACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTGgtaagtctgt ... tttaatgcagCTGAAATGGCCCGACGGCAGGCTCTCTTTCCTGGTGACTCGGAGTTGCAAC
EST: gi|71450237|gb|DR831287.1|DR831287
EST:     AACACATTACTCTACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTG                         CTGAAATGGCCCGACGGCAGGCTCTCTTTCCTGGTGACTCGGAGTTGCAAC
genomic: AACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTGgtaagtctgt ... tttaatgcagCTGAAATGGCCCGACGGCAGGCTCTCTTTCCTGGTGACTCGGAGTTGCAAC
EST: gi|71771339|gb|DR969276.1|DR969276
EST:     AACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTG                         CTGAAATGGCCCGACGGCAGGCTCTCTTTCCTG
genomic: AACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTGgtaagtctgt ... tttaatgcagCTGAAATGGCCCGACGGCAGGCTCTCTTTCCTG
EST: gi|91055879|gb|EB166297.1|EB166297
EST:     AACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTG                         CTGAAATGGCCCGACGGCAGGCTCTCTTTCCTGGTGACTCGGAGTTGCAAC
genomic: AACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTGgtaagtctgt ... tttaatgcagCTGAAATGGCCCGACGGCAGGCTCTCTTTCCTGGTGACTCGGAGTTGCAAC
EST: gi|87157025|gb|DY401814.1|DY401814
EST:     AACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTG                         CTGAAATGGGCCGACGGCAGGCTCTCTT
genomic: AACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTGgtaagtctgt ... tttaatgcagCTGAAATGGCCCGACGGCAGGCTCTCTT
EST: gi|76289583|gb|DV029151.1|DV029151
EST:     AACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTG                         CTGAAATGGCCCGACGGCAGGCTCTCTTTCCTGGTGACTCGGAGTTGCAAC
genomic: AACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTGgtaagtctgt ... tttaatgcagCTGAAATGGCCCGACGGCAGGCTCTCTTTCCTGGTGACTCGGAGTTGCAAC
EST: gi|91872387|gb|EB402344.1|EB402344
EST:     AACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTG                         CTGAAATGGCCCGACGGCAGGCTCTCCTTCCTGGTGACTCGGAGTT-CAAC
genomic: AACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTGgtaagtctgt ... tttaatgcagCTGAAATGGCCCGACGGCAGGCTCTCTTTCCTGGTGACTCGGAGTTGCAAC
EST: gi|211362664|gb|FL128442.1|FL128442
EST:     AACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTG                         CTGAAATGGCCCGACGGCAGGCTCTCTTTCCTGGTGACTCGGAGTTGCAAC
genomic: AACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTGgtaagtctgt ... tttaatgcagCTGAAATGGCCCGACGGCAGGCTCTCTTTCCTGGTGACTCGGAGTTGCAAC
EST: gi|76294289|gb|DV033857.1|DV033857
EST:     AACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTG                         CTGAAATGGCCCGACGGCAGGCTCTCTTTCCTGGTGACTCGGAGTTGCAAC
genomic: AACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTGgtaagtctgt ... tttaatgcagCTGAAATGGCCCGACGGCAGGCTCTCTTTCCTGGTGACTCGGAGTTGCAAC
EST: gi|71313277|gb|DR793172.1|DR793172
EST:     AACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTG                         CTGAAATGGCCCGACGGCAGGCTCTCTTTCCTGGTGACTCGGAGTTGCAAC
genomic: AACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTGgtaagtctgt ... tttaatgcagCTGAAATGGCCCGACGGCAGGCTCTCTTTCCTGGTGACTCGGAGTTGCAAC
EST: gi|71431609|gb|DR812659.1|DR812659
EST:     AACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTG                         CTGAAATGGCCCGACGGCAGGCTCTCTTT
genomic: AACACATTACTCAACTGGCGTTGATATGTGGTCTGTTGGATGCATCTTTGgtaagtctgt ... tttaatgcagCTGAAATGGCCCGACGGCAGGCTCTCTTT