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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGTGCATGTACCGCCGACCATTGCCCTTGCTACGAGAGGCCAGTTACAGAGCCTTAGACTTCAACTGGCTCTTCTTGACCGTGAATTTGATGATTTAGgtgtgccaatacattccatttgactcatttgatggtttacagtgtttcctgaaaacttagtgacgtggaattctttttgtttcag

Basic information

species Zea mays
transcript GRMZM2G492252_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G492252_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g16570.2 (Oryza sativa), 5'ss of exon 5
CGTGTGCATGTACCGCCGACCATTGCCCTTGCTACGAGAGGCCAGTTACAGAGCCTTAGACTTCAACTGGCTCTTCTTGACCGTGAATTTGATGATTTAGgtgtgcca----atacattccatttgactcatttgatggtttacagtgtttcctgaaaacttagtgacgtggaattctttttgttt-cag
|| |||||||| ||||||||||| || || || ||  ||||||  || ||||||||||| || ||||| || || |||||||| || || |||||||||||||   ||    || || |    || | |||| |  || ||   | |   ||||| || | |      || |      ||||| || |||
CGGGTGCATGTCCCGCCGACCATAGCTCTCGCCACACGAGGCCGTTTGCAGAGCCTTAGGCTCCAACTTGCGCTACTTGACCGCGAGTTCGATGATTTAGgtgatacactttattcacttaggttaattcatatactgcttcttact--ctcctgcaagcattacattgtagctgatgttttgcttgcag

upper sequence: GRMZM2G492252_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA11G14590.2 (Glycine max), 5'ss of exon 5
CGTGTGCATGTACCGCCGACCATTGCCCTTGCTACGAGAGGCCAGTTACAGAGCCTTAGACTTCAACTGGCTCTTCTTGACCGTGAATTTGATGATTTAGgtgtgccaatacattccatttgactcatttgatggtt--tacagtgtttcctgaaaact--tagtgacgtggaattctttttgtttcag---
||| | ||  | ||  |  | |||||  |||| || |||||    || ||| | ||||||||||| || || |||||||||||||||||||||||  ||||| |   | |    |  ||||  || | ||||       || |     | || ||| |   ||  | | |  |   |||| | ||   |   
CGTCTTCACATGCCATCATCTATTGCGATTGCAACCAGAGGAAGATTGCAGGGACTTAGACTTCAGCTTGCACTTCTTGACCGTGAATTTGATGAGCTAGgtattgtattttgatatatttt-ctaagttgaaaacccctaaaacaggtgctaaaagcaaataaaggcttacatagctttattttgtggcag

upper sequence: GRMZM2G492252_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT3G55530.1 (Arabidopsis thaliana), 5'ss of exon 5
CGTGTGCATGTACCGCCGACCATTGCCCTTGCTACGAGAGGCCAGTTACAGAGCCTTAGACTTCAACTGGCTCTTCTTGACCGTGAATTTGATGATTTAGgt--gtgcca---atacattccatttgactcatttgatggtttacagt--gtttcctgaaaacttagt--gacgtggaattctttttgtttcag---
 |  ||||||| || ||  ||||||| |||||||||||||| |   | ||| | ||||| || || |||||||||||||| || ||||||||||| ||||||  ||  ||        |||| ||| | |  | |   | ||   |||  | || ||        |||  ||     || |  || || | ||    
AGGTTGCATGTGCCTCCTTCCATTGCTCTTGCTACGAGAGGGCGTCTTCAGGGACTTAGGCTCCAGCTGGCTCTTCTTGATCGGGAATTTGATGACTTAGgtcagtatcatccgcttgttcctttttattagtctatagtttagtagtttgctttctatggttgaagtctgagacaaaagttgttctgctgcaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78074674|gb|DV503108.1|DV503108
EST:     CCTTAGACTTCAACTGGCTCTTCTTGACCGTGAATTTGATGATTTAG                         ATTATGACACTCTGAGAGCACTGGATGCTGACAATAGCCTGCATGTTCCTT
genomic: CCTTAGACTTCAACTGGCTCTTCTTGACCGTGAATTTGATGATTTAGgtgtgccaat ... tttgtttcagATTATGACACTCTGAGAGCACTGGATGCTGACAATAGCCTGCATGTTCCTT
EST: gi|60359234|gb|DN226207.1|DN226207
EST:     GACCGTGAATTTGATGATTTAG                         ATTATGACACTCTGAGAGCACTGGATGCTGACAATAGCCTGCATGTTCCTT
genomic: GACCGTGAATTTGATGATTTAGgtgtgccaat ... tttgtttcagATTATGACACTCTGAGAGCACTGGATGCTGACAATAGCCTGCATGTTCCTT
EST: gi|78123225|gb|DV541609.1|DV541609
EST:     GAGCCTTAGACTTCAACTGGCTCTTCTTGACCGTGAATTTGATGATTTAG                         ATTATGACACTCTGAGAGCACTGGATGCTGACAATAGCCTGCATGTTCCTT
genomic: GAGCCTTAGACTTCAACTGGCTCTTCTTGACCGTGAATTTGATGATTTAGgtgtgccaat ... tttgtttcagATTATGACACTCTGAGAGCACTGGATGCTGACAATAGCCTGCATGTTCCTT
EST: gi|71448720|gb|DR829770.1|DR829770
EST:     GAGCCTTAGACTTCAACTGGCTCTTCTTGACCGTGAATTTGATGATTTAG                         ATTATGACACTCTGAGAGCACTGGATGCTGACAATAGCCTGCATGTTCCTT
genomic: GAGCCTTAGACTTCAACTGGCTCTTCTTGACCGTGAATTTGATGATTTAGgtgtgccaat ... tttgtttcagATTATGACACTCTGAGAGCACTGGATGCTGACAATAGCCTGCATGTTCCTT
EST: gi|110517661|gb|EE022248.1|EE022248
EST:     GAGCCTTAGACTTCAACTGGCTCTTCTTGACCGTGAATTTGATGATTTAG                         ATTATGACACTCTGAGAGCACTGGATGCTGACAATAGCCTGCATGTTCCTT
genomic: GAGCCTTAGACTTCAACTGGCTCTTCTTGACCGTGAATTTGATGATTTAGgtgtgccaat ... tttgtttcagATTATGACACTCTGAGAGCACTGGATGCTGACAATAGCCTGCATGTTCCTT
EST: gi|88758240|gb|DY542381.1|DY542381
EST:     AGACTTCAACTGGCTCTTTTTGACCGTGAATTTGATGATTTAG                         ATTATGACACTCTGAGAGCACTGGATGCGGACAATAGCCTGCATGTTCCTT
genomic: AGACTTCAACTGGCTCTTCTTGACCGTGAATTTGATGATTTAGgtgtgccaat ... tttgtttcagATTATGACACTCTGAGAGCACTGGATGCTGACAATAGCCTGCATGTTCCTT
EST: gi|71774881|gb|DR972759.1|DR972759
EST:     AGCCTTAGACTTCAACT-GCTTCTTCTTGACCGTGAATTTGATGATTTAG                         ATTATGACACTCTGAGAGCACTGGATGCTGACAATAGCCTGCATGTTCCTT
genomic: AGCCTTAGACTTCAACTGGC-TCTTCTTGACCGTGAATTTGATGATTTAGgtgtgccaat ... tttgtttcagATTATGACACTCTGAGAGCACTGGATGCTGACAATAGCCTGCATGTTCCTT
EST: gi|60352872|gb|DN219845.1|DN219845
EST:     GAGCCTTAGACTTCAACTGGCTCTTCTTGACCGTGAATTTGATGATTTAG                         ATTATGACACTCTGAGAGCACTGGATGCTGACAATAGCCTGCATGTTCCTT
genomic: GAGCCTTAGACTTCAACTGGCTCTTCTTGACCGTGAATTTGATGATTTAGgtgtgccaat ... tttgtttcagATTATGACACTCTGAGAGCACTGGATGCTGACAATAGCCTGCATGTTCCTT
EST: gi|86467860|gb|DY234230.1|DY234230
EST:     GAGCCTTAGACTTCAACTGGCTCTTCTTGACCGTGAATTTGATGATTTAG                         ATTATGACACTCTGAGAGCACTGGATGCTGACAATAGCCTGCATGTTCCTT
genomic: GAGCCTTAGACTTCAACTGGCTCTTCTTGACCGTGAATTTGATGATTTAGgtgtgccaat ... tttgtttcagATTATGACACTCTGAGAGCACTGGATGCTGACAATAGCCTGCATGTTCCTT