1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAAAGTAGTGACACCGGACAACTATATTACACGGGCCTCTGGACTAATGTATGAGGACATTAAAGTCGGTACAGGCGACTCTCCAAAGGATGGTCAGCAGgttcttcctccaaatcaacggttttattttcttgtgctcatttactatttatttatgtgtgcctaatcaatataattttggtgttcttggatatgaatag...
species | Zea mays |
transcript | GRMZM2G488458_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATGAGGACATTAAAGTCGGTACAGGCGACTCTCCAAAGGATGGTCAGCAG ATTATATTCCATTATGTGGGCTACAATGAAACAGGACGAAGAATAGATAGCEST: gi|32840638|gb|CD980319.1|CD980319
genomic: ATGAGGACATTAAAGTCGGTACAGGCGACTCTCCAAAGGATGGTCAGCAGgttcttcctc ... tcatctacagATTATATTCCATTATGTGGGCTACAATGAAGCAGGACGAAGAATAGATAGC
EST: TACAGGCGACTCTCCAAAGGATGGTCAGCAG ATTATATTCCATTATGTGGGCTACAATGAAGCAGGACGAAGAATAGATAGCEST: gi|22546220|gb|BU098516.1|BU098516
genomic: TACAGGCGACTCTCCAAAGGATGGTCAGCAGgttcttcctc ... tcatctacagATTATATTCCATTATGTGGGCTACAATGAAGCAGGACGAAGAATAGATAGC
EST: ATGAGGACATTAAAGTCGGTACAGGCGACTCTCCAAAGGATGGTCAGCAG ATTATATTCCATTATGTEST: gi|87155227|gb|DY400016.1|DY400016
genomic: ATGAGGACATTAAAGTCGGTACAGGCGACTCTCCAAAGGATGGTCAGCAGgttcttcctc ... tcatctacagATTATATTCCATTATGT
EST: ATGAGGACATTAAAGTCGGTACAGGCGACTCTCCAAAGGATGGTCAGCAG ATTATATTCCATTATGTGGGCTACAATGAAGCAGGACGAAGAATAGATAGC
genomic: ATGAGGACATTAAAGTCGGTACAGGCGACTCTCCAAAGGATGGTCAGCAGgttcttcctc ... tcatctacagATTATATTCCATTATGTGGGCTACAATGAAGCAGGACGAAGAATAGATAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAGTAGTGACACCGGACAACTATATTACACGGGCCTCTGGACTAATGTATGAGGACATTAAAGTCGGTACAGGCGACTCTCCAAAGGATGGTCAGCAGgttcttcctccaaatcaacggttttattttcttgtgctcatttactatttatttatgtgtgcctaatcaatataattttggtgttcttggatatgaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG