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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAACGTGCGCAAACAACAAGAGCTTGATAAGAATCAGGTAGTTGACAAAACAATGAAGTCTGGACGGTCAACACAGCATAAACCAAAAGTCTCCAATGgttagcttgccttcccctcccatccccatgttgtctttaagaataaagggcatgtgagtatggctaggttgatagattctactcctatatatgatacatt...

Basic information

species Zea mays
transcript GRMZM2G484880_T05
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G484880_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os11g34300.2 (Oryza sativa), 5'ss of exon 4
GAAAACGTGCGCAAACAACAAGAGCTTGATAAGAATCAGGTAGTTGACAAAACAATGAAGTCTGGACGGTCAACACAGCATAAACCAAAAGTCTCCAATGgttagcttgccttcccctcccatccccatgttgtctttaagaataaagggcatgtgagtatggctaggttgatagattctactcctatatatgatacatt-------
|||||  | |||||||||||||||||||| ||||  || |||||||||||||   | || |||||||||||| | |||||||| ||||||| ||| ||||||||||||      |||||   |  ||||  ||   || |  | |     ||||    | |  || |||  |||| || |||| ||||  |||| |   |       
GAAAATATCCGCAAACAACAAGAGCTTGAAAAGAGCCAAGTAGTTGACAAAAGCGTAAAATCTGGACGGTCAGCGCAGCATAAGCCAAAAGGCTCTAATGgttagcttatgcctccctcttctttccat--tggaattgatgaca-----catgctttttttactgggtcaatagtttttacttctatccatgacaagctagatgta

upper sequence: GRMZM2G484880_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g01130.1 (Oryza sativa), 5'ss of exon 3
GAAAACGTGCGCAAACAACAAGAGCTTGATAAGAATCAGGTAGTTGACAAAACAATGAAGTCTGGACGGTCAACACAGCATAAACCAAAAGTCTCCAATGgttagcttgccttcccctcccatccccatgttgtctttaagaataaagggcatgtgagtatg-gctaggttgatagattctactcctatatatgatacatt
|||||  | |||||||||||||||||||| ||||  || | |||||||||||   | || |||||||||||| | |||||||| |||||||  || ||||||||||||      |||||   |||  ||  | ||  |  ||||  |   |   ||  | |   || ||| ||||| || |||| ||||   ||| |    
GAAAATATCCGCAAACAACAAGAGCTTGAAAAGAGCCAAGCAGTTGACAAAAGTGTAAAATCTGGACGGTCAGCGCAGCATAAGCCAAAAGGTTCTAATGgttagcttattcctccctcttctccgtattgtttccattggaattgattacgcatgcttttttactgggtcgatagtttttacttctatccgtgacaagc-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211058547|gb|FK994412.1|FK994412
EST:     AACAATGAAGTCTGGACGGTCAACACAGCATAAACCAAAAGTCTCCAATG                         CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA
genomic: AACAATGAAGTCTGGACGGTCAACACAGCATAAACCAAAAGTCTCCAATGgttagcttgc ... cattgttcagCGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA
EST: gi|211058545|gb|FK994410.1|FK994410
EST:     AACAATGAAGTCTGGACGGTCAACACAGCATAAACCAAAAGTCTCCAATG                         CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAT
genomic: AACAATGAAGTCTGGACGGTCAACACAGCATAAACCAAAAGTCTCCAATGgttagcttgc ... cattgttcagCGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAT
EST: gi|93284203|gb|EB676467.1|EB676467
EST:     AACAATGAAGTCTGGACGGTCAACACAGCATAAACCCAAAGTCTCCAATG                         CGGATGCAAAAGCTGATAAAGATGACACTAAAAGTCTCA
genomic: AACAATGAAGTCTGGACGGTCAACACAGCATAAACCAAAAGTCTCCAATGgttagcttgc ... cattgttcagCGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA
EST: gi|13178287|gb|BG349545.1|BG349545
EST:     AACAATGAAGTCTGGACGGTCAACACAGCATAAACCAAAAGTCTCCAATG                         CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA
genomic: AACAATGAAGTCTGGACGGTCAACACAGCATAAACCAAAAGTCTCCAATGgttagcttgc ... cattgttcagCGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA
EST: gi|31997934|gb|CD661839.1|CD661839
EST:     AACAATGAAGTCTGGACGGTCAACACAGCATAAACCAAAAGTCTCCAATG                         CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA
genomic: AACAATGAAGTCTGGACGGTCAACACAGCATAAACCAAAAGTCTCCAATGgttagcttgc ... cattgttcagCGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA
EST: gi|166482492|gb|EG041825.1|EG041825
EST:     GGTCAACACAGCATAAACCAAAAGTCTCCAATG                         CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA
genomic: GGTCAACACAGCATAAACCAAAAGTCTCCAATGgttagcttgc ... cattgttcagCGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA
EST: gi|211058548|gb|FK994413.1|FK994413
EST:     ACAATGAAGTCTGGACGGGTCA-CACAGCATAAACCCAAAGTCTCCAATG                         CGGATGCAAAAGCTGA
genomic: ACAATGAAGTCTGGACGG-TCAACACAGCATAAACCAAAAGTCTCCAATGgttagcttgc ... cattgttcagCGGATGCAAAAGCTGA