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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCACATGCAAATTTGGTTCCAATTGCAAGTTTGATCATCCCAGGGAAAGTGGTTTTGTACCTGTCGCTTTAAACAACAGTGGATTCCCTCTACGTCTGgtgggtgttctcatttcatgtttctgtttaatctaggatcttgtttatttattttatgaaaatttcgtggttaatgtag

Basic information

species Zea mays
transcript GRMZM2G475017_T03
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31910491|gb|CD651450.1|CD651450
EST:     GTGGTTTTGTACCTGTCGCTTTAAACAACAGTGGATTCCCTCTACGTCTG                         GGTGAAAAGGAATGTTCGTATTACATGAAAACTGGACATTGCAAATTTGGA
genomic: GTGGTTTTGTACCTGTCGCTTTAAACAACAGTGGATTCCCTCTACGTCTGgtgggtgttc ... gttaatgtagGGTGAAAAGGAATGTTCGTATTACATGAAAACTGGACATTGCAAATTTGGA
EST: gi|78116119|gb|DV534507.1|DV534507
EST:     GTGGTTTTGTACCTGTCGCTTTAAACAACAGTGGATTCCCTCTACGTCTG                         GGTGAAAAGGAATGTTCGTATTACATGAAAACTGGACATTGCAAATTTGGA
genomic: GTGGTTTTGTACCTGTCGCTTTAAACAACAGTGGATTCCCTCTACGTCTGgtgggtgttc ... gttaatgtagGGTGAAAAGGAATGTTCGTATTACATGAAAACTGGACATTGCAAATTTGGA
EST: gi|91876225|gb|EB406182.1|EB406182
EST:     GTGGTTTTGTACCTGTCGCTTTAAACAACAGTGGATTCCCTCTACGTCTG                         GGTGAAAAGGAATGTTCGTATTACATGAAAACTGGACATTGCAAATTTGGA
genomic: GTGGTTTTGTACCTGTCGCTTTAAACAACAGTGGATTCCCTCTACGTCTGgtgggtgttc ... gttaatgtagGGTGAAAAGGAATGTTCGTATTACATGAAAACTGGACATTGCAAATTTGGA
EST: gi|94474028|gb|EB702986.1|EB702986
EST:     GTGGTTTTGTACCTGTCGCTTTAAACAACAGTGGATTCCCTCTACGTCTG                         GGTGAAAAGGAATGTTCGTATTACATGAAAACTGGACATTGCAAATTTG
genomic: GTGGTTTTGTACCTGTCGCTTTAAACAACAGTGGATTCCCTCTACGTCTGgtgggtgttc ... gttaatgtagGGTGAAAAGGAATGTTCGTATTACATGAAAACTGGACATTGCAAATTTG
EST: gi|76921023|gb|DV168420.1|DV168420
EST:     GTGGTTTTGTACCTGTCGCTTTAAACAACAGTGGATTCCCTCTACGTCTG                         GGTGAAAAGGAATGTTCGTATTACATGAAAACTGGACATTGCAAATTTGGA
genomic: GTGGTTTTGTACCTGTCGCTTTAAACAACAGTGGATTCCCTCTACGTCTGgtgggtgttc ... gttaatgtagGGTGAAAAGGAATGTTCGTATTACATGAAAACTGGACATTGCAAATTTGGA
EST: gi|71775279|gb|DR973157.1|DR973157
EST:     GTGGTTTTGTACCTGTCGCTTTAAACAACAGTGGATTCCCTCTACGTCTG                         GGTGAAAAGGAATGTTCGTATTACATGAAAACTGGACATTGCAAATTTGGA
genomic: GTGGTTTTGTACCTGTCGCTTTAAACAACAGTGGATTCCCTCTACGTCTGgtgggtgttc ... gttaatgtagGGTGAAAAGGAATGTTCGTATTACATGAAAACTGGACATTGCAAATTTGGA
EST: gi|211121575|gb|FL034194.1|FL034194
EST:     GTGGTTTTGTACCTGTCGCTTTAAACAACAGTGGATTCCCTCTACGTCTG                         GGTGAAAAGGAATGTTCCTATTACATGAAAACTGGACATTGCAAATTTGGA
genomic: GTGGTTTTGTACCTGTCGCTTTAAACAACAGTGGATTCCCTCTACGTCTGgtgggtgttc ... gttaatgtagGGTGAAAAGGAATGTTCGTATTACATGAAAACTGGACATTGCAAATTTGGA
EST: gi|76289471|gb|DV029039.1|DV029039
EST:     GTGGTTTTGTACCTGTCGCTTTAAACAACAGTGGATTCCCTCTACGTCTG                         GGTGAAAAGGAATGTTCGTATTACATGAAAACTGGACATTGCAAATTTGGA
genomic: GTGGTTTTGTACCTGTCGCTTTAAACAACAGTGGATTCCCTCTACGTCTGgtgggtgttc ... gttaatgtagGGTGAAAAGGAATGTTCGTATTACATGAAAACTGGACATTGCAAATTTGGA
EST: gi|50338849|gb|CO533975.1|CO533975
EST:     GTGGTTTTGTACCTGTCGCTTTAAACAACAGTGGATTCCCTCTACGTCTG                         GGTGAAAAGGAATGTTCGTATTACATGAAAACTGGACATTGCAAATTTGGA
genomic: GTGGTTTTGTACCTGTCGCTTTAAACAACAGTGGATTCCCTCTACGTCTGgtgggtgttc ... gttaatgtagGGTGAAAAGGAATGTTCGTATTACATGAAAACTGGACATTGCAAATTTGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGCACATGCAAATTTGGTTCCAATTGCAAGTTTGATCATCCCAGGGAAAGTGGTTTTGTACCTGTCGCTTTAAACAACAGTGGATTCCCTCTACGTCTGgtgggtgttctcatttcatgtttctgtttaatctaggatcttgtttatttattttatgaaaatttcgtggttaatgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA