1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTGCAGATTTCGGGTTGGCCAAATACCAAGCAGCTGAAGTCACCCCTGTTTCTACGCGTGTGATAGGAACCTTCGGgtaaatcgttctgtgatgttggcagggcacacactcaccaattcgcccacatacagcataacctgctgacgcatattctaagactgaatttctgttgtcttttgtttttgtccgcag
species | Zea mays |
transcript | GRMZM2G470499_T05 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAAGCAGCTGAAGTCACCCCTGTTTCTACGCGTGTGATAGGAACCTTCGG ATATCTGGCTCCAGAGTACGCTGCCACAGGCAAAATTAGCGACCGGTCCGAEST: gi|71315889|gb|DR794631.1|DR794631
genomic: CAAGCAGCTGAAGTCACCCCTGTTTCTACGCGTGTGATAGGAACCTTCGGgtaaatcgtt ... ttgtccgcagATATCTGGCTCCAGAGTACGCTGCCACAGGCAAAATTAGCGACCGGTCCGA
EST: CAAGCAGCTGAAGTCACCCCTGTTTCTACGCGTGTGATAGGAACCTTCGG ATATCTGGGCTC-AGAGTACGCTGEST: gi|71430040|gb|DR811090.1|DR811090
genomic: CAAGCAGCTGAAGTCACCCCTGTTTCTACGCGTGTGATAGGAACCTTCGGgtaaatcgtt ... ttgtccgcagATATCTGG-CTCCAGAGTACGCTG
EST: CAAGCAGCTGAAGTCACCCCTGTTTCTACGCGTGTGATAGGAACCTTCGG ATATCTGGCTCCAGAGTACGCTGCCACAGGCAAAATTAGCGACCGGTCCGA
genomic: CAAGCAGCTGAAGTCACCCCTGTTTCTACGCGTGTGATAGGAACCTTCGGgtaaatcgtt ... ttgtccgcagATATCTGGCTCCAGAGTACGCTGCCACAGGCAAAATTAGCGACCGGTCCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCAGATTTCGGGTTGGCCAAATACCAAGCAGCTGAAGTCACCCCTGTTTCTACGCGTGTGATAGGAACCTTCGGgtaaatcgttctgtgatgttggcagggcacacactcaccaattcgcccacatacagcataacctgctgacgcatattctaagactgaatttctgttgtcttttgtttttgtccgcag
- - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - CTGAAG