1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTATGGGCCGGTCTACAAGGCCACGCTTGACGACACTCTCGTGGCCGTCAAGATCCTCTACTCTAATGTGACGCAGGGACTGAAGCAGTTTCGACAGGAGgtacgtactaaactactacgagccctgttctgttgcattgcattcgcatgcacgcatttggttgtttcgcattttttgtttgttttatggagaaaccgtcggcggcggcggcgtcggcag
species | Zea mays |
transcript | GRMZM2G467703_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGATCCTCTACTCTAATGTGACGCAGGGACTGAAGCAGTTTCGACAGGAG GTTGAGCTGCTGAACAACATCCGTCACCCGAACATGGTGCGCCTGGTGGGGEST: gi|94478727|gb|EB707685.1|EB707685
genomic: AGATCCTCTACTCTAATGTGACGCAGGGACTGAAGCAGTTTCGACAGGAGgtacgtacta ... gcgtcggcagGTTGAGCTGCTGAACAACATCCGTCACCCGAACATGGTGCGCCTGGTGGGG
EST: AGATCCTCTACTCTAATGTGACGCAGGGACTGAAGCAGTTTCGACAGGAG GTTGAGCTGCTGAACAACATCCGTCACCCGAACATGGTGCGCCTGGTGGGGEST: gi|94480228|gb|EB709186.1|EB709186
genomic: AGATCCTCTACTCTAATGTGACGCAGGGACTGAAGCAGTTTCGACAGGAGgtacgtacta ... gcgtcggcagGTTGAGCTGCTGAACAACATCCGTCACCCGAACATGGTGCGCCTGGTGGGG
EST: AGATCCTCTACTCTAATGTGACGCAGGGACTGAAGCAGTTTCGACAGGAG GTTGAGCTGCTGAACAACATCCGTCACCCGAACATGGTGCGCCTGGTGGGGEST: gi|71310305|gb|DR791446.1|DR791446
genomic: AGATCCTCTACTCTAATGTGACGCAGGGACTGAAGCAGTTTCGACAGGAGgtacgtacta ... gcgtcggcagGTTGAGCTGCTGAACAACATCCGTCACCCGAACATGGTGCGCCTGGTGGGG
EST: AGATCCTCTACTCTAATGTGACGCAGGGACTGAAGCAGTTTCGACAGGAG GTTGAGCTGCTGAACAACATCCGTCACCCGAACATGGTGCGCCTGGTGGGGEST: gi|84969860|gb|DW468272.1|DW468272
genomic: AGATCCTCTACTCTAATGTGACGCAGGGACTGAAGCAGTTTCGACAGGAGgtacgtacta ... gcgtcggcagGTTGAGCTGCTGAACAACATCCGTCACCCGAACATGGTGCGCCTGGTGGGG
EST: AGATCCTCTACTCTAATGTGACGCAGGGACTGAAGCAGTTTCGACAGGAG GTTGAGCTGCTGAACAACATCCGTCACCCGAACATGGTGCGCCTGGTGGGGEST: gi|74245183|gb|DT653097.1|DT653097
genomic: AGATCCTCTACTCTAATGTGACGCAGGGACTGAAGCAGTTTCGACAGGAGgtacgtacta ... gcgtcggcagGTTGAGCTGCTGAACAACATCCGTCACCCGAACATGGTGCGCCTGGTGGGG
EST: AGATCCTCTACTCTAATGTGACGCAGGGACTGAAGCAGTTTCGACAGGAG GTTGAGCTGCTGAACAACATCCGTCACCCGAACATGGTGCGCCTGGTGGGGEST: gi|148959318|gb|EC905384.2|EC905384
genomic: AGATCCTCTACTCTAATGTGACGCAGGGACTGAAGCAGTTTCGACAGGAGgtacgtacta ... gcgtcggcagGTTGAGCTGCTGAACAACATCCGTCACCCGAACATGGTGCGCCTGGTGGGG
EST: AGATCCTCTACTCTAATGTGACGCAGGGACTGAAGCAGTTTCGACAGGAG GTTGAGCTGCTGAACAACATCCGTCACCCGAACATGGTGCGCCTGGTGGGGEST: gi|76919470|gb|DV167726.1|DV167726
genomic: AGATCCTCTACTCTAATGTGACGCAGGGACTGAAGCAGTTTCGACAGGAGgtacgtacta ... gcgtcggcagGTTGAGCTGCTGAACAACATCCGTCACCCGAACATGGTGCGCCTGGTGGGG
EST: AGATCCTCTACTCTAATGTGACGCAGGGACTGAAGCAGTTTCGACAGGAG GTTGAGCTGCTGAACAACATCCGTCACCCGAACATGGTGCGCCTGGTGGGG
genomic: AGATCCTCTACTCTAATGTGACGCAGGGACTGAAGCAGTTTCGACAGGAGgtacgtacta ... gcgtcggcagGTTGAGCTGCTGAACAACATCCGTCACCCGAACATGGTGCGCCTGGTGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATGGGCCGGTCTACAAGGCCACGCTTGACGACACTCTCGTGGCCGTCAAGATCCTCTACTCTAATGTGACGCAGGGACTGAAGCAGTTTCGACAGGAGgtacgtactaaactactacgagccctgttctgttgcattgcattcgcatgcacgcatttggttgtttcgcattttttgtttgttttatggagaaaccgtcggcggcggcggcgtcggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC