Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGATCTTGTGGCTGgtagattccttcttgctgttccaaaattctaaacagttggggaagtttttttttaacttctaatgtgcgtttctgttag

Basic information

species Zea mays
transcript GRMZM2G464000_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G464000_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os07g29450.1 (Oryza sativa), 5'ss of exon 5
GTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGATCTTGTGGCTGgtagattccttcttgctgttccaaaattctaaacagttggggaagtttttttttaacttctaatgtgcgtttctgttag
||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||  ||| |  ||  | | | |   |   |   |  |  | ||| |        | ||||||   |  ||||| ||||
GTAAAAGGTGCTCAACTTTGGGGAACGGATATTTATACAAATGATTCAGATCTTGTCGCTGgtaagttcttgattattttccaagcgtgaaacgaacctctgaaagct-------gatttctaaacggtctttcttttag

upper sequence: GRMZM2G464000_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT5G08450.1 (Arabidopsis thaliana), 5'ss of exon 5
GTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGATCTTGTGGCTGgtagattccttcttg----ctgttccaaaattctaaacagttggggaagtttttttttaacttctaatgtgcgtttctgttag
||||  ||||  ||||| ||||||||||||||||| ||| | ||||| |||||||| |||||||  | || |  ||     | | | |  ||| |      ||||        |    |   ||||  | | | | ||   |||
GTAAGAGGTGGCCAACTATGGGGAACAGATATATACACAGACGATTCCGATCTTGTTGCTGgtatgtaccctaatgaatcttatgcaattattatctttgtttggcccgaacatgacattgattctggtctacctgtcatctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211146179|gb|FK958443.1|FK958443
EST:     TCAACTTTGGGGAACAGATATATATACAAATGATTCAGATCTTGTGGCTG                         TGCTAATGCATACTGGCTATTGCTCGCCTACGTCCTCCCCTCCCCCATCTG
genomic: TCAACTTTGGGGAACAGATATATATACAAATGATTCAGATCTTGTGGCTGgtagattcct ... tttctgttagTGCTAATGCATACTGGCTATTGCTCGCCTACGTCCTCCCCTCCCCCATCTG
EST: gi|32823438|gb|CD963160.1|CD963160
EST:     GATCTTGTGGCTG                         TGCTAATGCATACTGGCTATTGCTCGCCTACGTCCTCCCCTCCCCCATCTG
genomic: GATCTTGTGGCTGgtagattcct ... tttctgttagTGCTAATGCATACTGGCTATTGCTCGCCTACGTCCTCCCCTCCCCCATCTG
EST: gi|26558158|gb|CA830393.1|CA830393
EST:     TCAACTTTGGGGAACAGATATATATACAAATGATTCAGATCTTGTGGCTG                         TGCTAATGCATACTGGCTATTGCTCGCCTACGTCCTCCCCTCCCCCATCTG
genomic: TCAACTTTGGGGAACAGATATATATACAAATGATTCAGATCTTGTGGCTGgtagattcct ... tttctgttagTGCTAATGCATACTGGCTATTGCTCGCCTACGTCCTCCCCTCCCCCATCTG
EST: gi|67024103|gb|CO452852.1|CO452852
EST:     TCAACTTTGGGGAACAGATATATATACAAATGATTCAGATCTTGTGGCTG                         TGCTAATGCATACTGGCTATTGCTCGCCTACGTCCTCCCCTCCCNCATCTG
genomic: TCAACTTTGGGGAACAGATATATATACAAATGATTCAGATCTTGTGGCTGgtagattcct ... tttctgttagTGCTAATGCATACTGGCTATTGCTCGCCTACGTCCTCCCCTCCCCCATCTG
EST: gi|58029867|gb|CX725294.1|CX725294
EST:     GGGGAACAGATATATATACAAATGATTCAGATCTTGTGGCTG                         TGCTAATGCATACTGGCTATTGCTCGCCTACGTCCTCCCCTCCCCCATCTG
genomic: GGGGAACAGATATATATACAAATGATTCAGATCTTGTGGCTGgtagattcct ... tttctgttagTGCTAATGCATACTGGCTATTGCTCGCCTACGTCCTCCCCTCCCCCATCTG
EST: gi|21987866|gb|BQ779394.1|BQ779394
EST:     TCAACTTTGGGGAACAGATATATATACAAATGATTCAGATCTTGTGGCTG                         TGCTAATGCATACTGGCTATTGCTCGCCTACGTCCTCCCCTCCCCCATCTG
genomic: TCAACTTTGGGGAACAGATATATATACAAATGATTCAGATCTTGTGGCTGgtagattcct ... tttctgttagTGCTAATGCATACTGGCTATTGCTCGCCTACGTCCTCCCCTCCCCCATCTG
EST: gi|32931653|gb|CF036465.1|CF036465
EST:     TCAACTTTGGGGAACAGATATATATACAAATGATTCAGATCTTGTGGCTG                         TGCTAATGCATACTGGCTATTGCTCGCCTACGTCCTCCCCTCCCCCATCTG
genomic: TCAACTTTGGGGAACAGATATATATACAAATGATTCAGATCTTGTGGCTGgtagattcct ... tttctgttagTGCTAATGCATACTGGCTATTGCTCGCCTACGTCCTCCCCTCCCCCATCTG
EST: gi|32822990|gb|CD962699.1|CD962699
EST:     GATCTCGTGGCTG                         TGCTAATGCATACTGGCTATTGCTCGCCTACGTCCTCCCCTCCCCCATCTG
genomic: GATCTTGTGGCTGgtagattcct ... tttctgttagTGCTAATGCATACTGGCTATTGCTCGCCTACGTCCTCCCCTCCCCCATCTG
EST: gi|32934961|gb|CF039773.1|CF039773
EST:     TCAACTTTGGGGAACAGATATATATACAAATGATTCAGATCTTGTGGCTG                         TGCTAATGCATACTGGCTATTGCTCGCCTACGTCCTCCCCTCCCCCATCTG
genomic: TCAACTTTGGGGAACAGATATATATACAAATGATTCAGATCTTGTGGCTGgtagattcct ... tttctgttagTGCTAATGCATACTGGCTATTGCTCGCCTACGTCCTCCCCTCCCCCATCTG