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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGCACACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTCAATCGATACATATGGATTATTGGAATGATTTATGCTTACTTCCATCCTAATgtaagtatttcaaatatggacctatattaccctgatcaccctctgagattgtatctgcgagattttactggatacgtctcgatatattttccctaatcta...

Basic information

species Zea mays
transcript GRMZM2G463445_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G463445_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g50510.1 (Oryza sativa), 5'ss of exon 9
CAAGGCACACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTCAATCGATACATATGGATTATTGGAATGATTTATGCTTACTTCCATCCTAATgtaagtatttcaaatatggacctatattaccctgatcaccctctgagattgtatctgcgagat-----tttactggatacgtctcgatatattttccctaatcta-----------------------------------------------------------------------------
||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||   |||||| | | ||| ||       |||| ||  | || ||  | |||       | ||| |  | | | || ||| ||||   |  |   |                                                                             
CAAGGCAAACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTTGATCGATACATATGGATTATTGGAATGATCTATGCTTACTTCCACCCTAATgtaagtaattcggttatggatccacatttcct------ccctttggaactgcatgagtgagcagtacatataccgtgttcctttc-atacatttcttcctagggagttctctcttattttaagaatatgttccttgtttatactatatattaatgtagcatggaatccgctatctgaaatag

upper sequence: GRMZM2G463445_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 10
CAAGGCACACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTCAATCGATACATATGGATTATTGGAATGATTTATGCTTACTTCCATCCTAATgtaagtatttcaaatatggacctatattaccctgatcaccctctgagattgtatctgcgagatttta-ctggatacgtc----tcgatatattttccctaatcta
 ||| |  |  | || |   | ||||||||||||||| ||||||| ||  |||| ||||| ||||| ||||||||||||||||| || || ||||| ||||||   || || ||||    | | | |     || |||     | |  || | | |   | | ||   |  | ||  |     | || ||||||  ||   ||  
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTATTTTCATCCAAATgta---atctcgaatactagcttttgtag---tggtcattgggtaattttttttatataatagttggtccagctattttaaatttgaaatatttcaccatctcag

upper sequence: GRMZM2G463445_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 10
CAAGGCACACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTCAATCGATACATATGGATTATTGGAATGATTTATGCTTACTTCCATCCTAATgtaagtatttcaaatatggacctatattaccctgatcaccctctgagattgtatctgcgagattttactggatacgtctcgatatattttccctaatcta
 ||| |  |  | || |   | ||||||||||||||| ||||||| ||  |||| ||||| ||||| ||||||||||||||||| ||||| ||||| ||||||   || || ||||    | | | |     | ||       |    || ||  |      |    ||   |     | || ||||||  ||   ||  
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTACTTTCATCCAAATgta---atctccaatactagcttgtgtggtggtcattgggtattttttttataa-tatttagtccagctattttaaatttgaaatatttcaccatctcag

upper sequence: GRMZM2G463445_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 9
CAAGGCACACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTCAATCGATACATATGGATTATTGGAATGATTTATGCTTACTTCCATCCTAATgtaagtatttcaaatatggacctatattaccctgatcaccctctgagattgtatctgcgagattttactggatacgtctcgatatattttccctaatcta
 ||  || |  |||| ||  ||||||| ||||| ||| |||| || ||  | || ||||||||||| ||||||||||| ||||| || |||||||| | ||||| | ||  |  ||  | | | |  |    | || | | ||| |  |     || |||    |||    |||  | | || || ||      |     
TAAACCAGAACTACCACTTTTACATGAATGGCACTTCAGATCAGGACTTGACCGCTACATATGGATCATTGGAATGATATATGCCTATTTCCATCCCACTgtaactcttgaacctacagccttctcgttttttcat-atcttctca--tgaaccctacga----tta--aaatattttttgacattttcatttcag----