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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTTTGTAGTTGGAGTTAATGAGAATAACTATGATCCAAAGATGAATGATGTTTCTAATGCAAATTGCACCACCAACTGCCTTGCTCCACTTGCCAAGgtcatttttatttctgcttgtttatcagtgtccaatttcgaccaacatggatatttgggtgagctttaaagggacattagttaggtcgggatggaagtgg...

Basic information

species Zea mays
transcript GRMZM2G462894_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G462894_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g07490.1 (Oryza sativa), 5'ss of exon 8
AATGTTTGTAGTTGGAGTTAATGAGAATAACTATGATCCAAAGATGAATGATGTTTCTAATGCAAATTGCACCACCAACTGCCTTGCTCCACTTGCCAAGgtcatt--tttatttctgcttgt-ttatcagtgtccaatttcgaccaacatggatatttgg-----gtgagcttt-aaagggacattagttaggtcgggatggaagtgg----------------
||||||||| |||||||| |||||||| | ||||||||| || ||||||| ||||||||| |||| ||| || |||||||| |||||||| ||||||||||| | |  | |||||||  |  | |||  | | ||| ||||  | ||  |   | | || |     ||||  ||| | |    | |   |    | | | |    |                   
AATGTTTGTCGTTGGAGTAAATGAGAAGAGCTATGATCCTAAAATGAATGTTGTTTCTAACGCAAGTTGTACTACCAACTGTCTTGCTCCTCTTGCCAAGgtaacttatctatttctaatcctgttactattttcccattttaatcataacaaacaatttgctcttgtgatttttcatattttcgtccatccaatggagctaattgatattccatgggtatgcag

upper sequence: GRMZM2G462894_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv19s0085g00600.t01 (Vitis vinifera), 5'ss of exon 8
AATGTTTGTAGTTGGAGTTAATGAGAATAACTATGATCCAAAGATGAATGATGTTTCTAATGCAAATTGCACCACCAACTGCCTTGCTCCACTTGCCAAGgtcatttttatttctgcttgtttatcagtgtccaatttcgaccaacatggatatttg-ggtgagctttaaagggacattagttaggtcgggatggaagtgg
 |||||||| || ||||| ||||||| |   ||  | ||||  ||||||  ||||||||||||||  || |||||||| ||||||||||| |||||||||||    |   ||  ||    ||      ||   |   | | | |   |   | |||  | ||||   |     |  | |   |   |     |     |  
GATGTTTGTGGTAGGAGTAAATGAGACTTCATACAAGCCAAGCATGAATATTGTTTCTAATGCAAGCTGTACCACCAATTGCCTTGCTCCTCTTGCCAAGgtttgatagcttattgaactttctgttttgcaaatgattggctacagtaattttttatgatgagaaatggttagctaatgcctgacttcatttatctatt-

upper sequence: GRMZM2G462894_T01 (Zea mays), 5'ss of exon 4
lower sequence: PP1S57_242V6.1 (Physcomitrella patens), 5'ss of exon 7
AATGTTTGTAGTTGGAGTTAATGAGAATAACTATGATCCAAAGATGAATGATGTTTCTAATGCAAATTGCACCACCAACTGCCTTGCTCCACTTGCCAAGgtcatttttatttctgcttgtttatcagtgtccaatttcgaccaacatggatatttgggtgagctttaaagggacattag--ttaggtcgggatggaagtgg
|||||| ||  | || || |||||||||   ||        | |||||   |||||||||||| |  |||||||||||||| ||||| |||||||||||||| |      |   | | | || |  | | | |   ||    ||| |    ||  | ||| | |   |||  ||   ||   ||   | |   |  ||   |
AATGTTCGTCATGGGTGTAAATGAGAATTCGTACACGGATGACATGAACATTGTTTCTAATGCTAGCTGCACCACCAACTGTCTTGCCCCACTTGCCAAGgtgaaccacgtgctt-cgtcttcaatacttttctcctttcttcaagaatattacattggttaaccgaaaacagaggctaaattttcatggtattttaaccag