1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGAACACATTTTGGAAGTACTACTCAGGAGAAGCAGTTGCTCCGTACCCAACCATCTTTATTGGTGGAAACCACGAAGCATCCAATTATCTGTGGGAATTgtgagtgtttgcaatttctataatttgtggtttcccctttcccctagattgttaacatatcctcaagttcatgtttgtttacaaataactagaatctgtg...
species | Zea mays |
transcript | GRMZM2G461145_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACCATCTTTATTGGTGGAAACCACGAAGCATCCAATTATCTGTGGGAATT GTACTATGGAGGATGGGCAGCACCTAACATATACTTTTTGGGGTTTGCTGGEST: gi|5847378|gb|AW000457.1|AW000457
genomic: ACCATCTTTATTGGTGGAAACCACGAAGCATCCAATTATCTGTGGGAATTgtgagtgttt ... tatttatcagGTACTATGGAGGATGGGCAGCACCTAACATATACTTTTTGGGGTTTGCTGG
EST: ACCATCTTTATTGGTGGAAACCACGAAGCATCCAATTATCTGTGGGAATT GTACTATGGAGGATGGGCAGCACCTAACATATACTTTTTGGGGTTTGCTGGEST: gi|4730521|gb|AI649687.1|AI649687
genomic: ACCATCTTTATTGGTGGAAACCACGAAGCATCCAATTATCTGTGGGAATTgtgagtgttt ... tatttatcagGTACTATGGAGGATGGGCAGCACCTAACATATACTTTTTGGGGTTTGCTGG
EST: ACCATCTTTATTGGTGGAAACCACGAAGCATCCAATTATCTGTGGGAATT GTACTATGGAGGATGGGCAGCACCTAACATATACTTTTTGGGGTTTGCTGGEST: gi|31357484|gb|CD441841.1|CD441841
genomic: ACCATCTTTATTGGTGGAAACCACGAAGCATCCAATTATCTGTGGGAATTgtgagtgttt ... tatttatcagGTACTATGGAGGATGGGCAGCACCTAACATATACTTTTTGGGGTTTGCTGG
EST: ACCATCTTTATTGGTGGAAACCACGAAGCATCCAATTATCTGTGGGAATT GTACTATGGAGGATGGGCGGGACCTAACATATACTTTTTGGGGTTTGCTGG
genomic: ACCATCTTTATTGGTGGAAACCACGAAGCATCCAATTATCTGTGGGAATTgtgagtgttt ... tatttatcagGTACTATGGAGGATGGGCAGCACCTAACATATACTTTTTGGGGTTTGCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAACACATTTTGGAAGTACTACTCAGGAGAAGCAGTTGCTCCGTACCCAACCATCTTTATTGGTGGAAACCACGAAGCATCCAATTATCTGTGGGAATTgtgagtgtttgcaatttctataatttgtggtttcccctttcccctagattgttaacatatcctcaagttcatgtttgtttacaaataactagaatctgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaataa