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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCACCTTTATAAGGAGAACAAGGACACGCATGAGGCACTAGGGGTTATAGGAAAATTGGCAGGGGTTCAGgtagtctccatgttttacttcatcaaagtacttcacatgttttctgttgagtcgctcaattttctcgtcacctccattgattggttggtggtattaatttccacag

Basic information

species Zea mays
transcript GRMZM2G459702_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G459702_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g56620.1 (Oryza sativa), 5'ss of exon 4
GTTTCACCTTTATAAGGAGAACAAGGACACGCATGAGGCACTAGGGGTTATAGGAAAATTGGCAGGGGTTCAGgtagtctccatgttttacttcatcaaagtacttc--acatgttttctgttgagtcgctcaattttctcgtcacctccattgattggttggtggtattaatttccacag
|||||| ||||| ||||||||||||||||| || |||||||||||    ||||| ||  ||  |||| |||||||        | |  |  |||||  ||||| ||      |||  | | || |||   | ||||   ||  |   |    | |||| ||||||     | || ||||||
GTTTCATCTTTACAAGGAGAACAAGGACACCCAAGAGGCACTAGGAAAGATAGGCAAGATGCTAGGGCTTCAGgtgcatgttgtttgctgtttcattgaagtatttgcagggtgtcctgtttttagtttataaattcattcagc-tgtttgctaattgattggtgactaaacttcccacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28873554|gb|CB329529.1|CB329529
EST:     CATGAGGCACTAGGGGTTATAGGAAAATTGGCAGGGGTTCAG                         CCAAGATCGTTTGGATTTGCAGGGACAAAGGATAAACGTGCTGTTACAACC
genomic: CATGAGGCACTAGGGGTTATAGGAAAATTGGCAGGGGTTCAGgtagtctcca ... atttccacagCCAAGATCGTTTGGATTTGCAGGGACAAAGGATAAACGTGCTGTTACAACC