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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACAAGGGAGTTTATGAATACTGTAGATCAAAAGGGATAGATCTGGGCAAACCTGTTGCGCTTGACGTCGTTGTTGATGGCACAGTTCCTCAAGgtttgatttagtgctttgggtgtacaaatatatccttctgttcatgtttataaaaataaaggattgctgctgttatttctcctgttag

Basic information

species Zea mays
transcript GRMZM2G458549_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G458549_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g61710.1 (Oryza sativa), 5'ss of exon 4
ATACAAGGGAGTTTATGAATACTGTAGATCAAAAGGGATAGATCTGGGCAAACCTGTTGCGCTTGACGTCGTTGTTGATGGCACAGTTCCTCAAGgtttgatttagtgctttgggtgtacaaatatatc--cttctgttcatgtttataa-aaataaaggattgctgc-tgttatttctcctgt-tag
|||||||||||||||||| || ||||| ||||||||||||||| ||||   ||||||||  ||||| || |||||||||||||||||||||  |||| |  ||| |   ||| | | |   | | | ||   | |   | ||    ||   || |     ||   ||| |||| || ||| | | |||
ATACAAGGGAGTTTATGAGTATTGTAGGTCAAAAGGGATAGATATGGGTGGACCTGTTGGCCTTGATGTAGTTGTTGATGGCACAGTTCCTACAGgtatatttttgatattttgttttgggattctttcacttccaaataataagcatgttaagtttgacatgattgcgtgttgttactcttatgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32806294|gb|CD958528.1|CD958528
EST:     GGGCAAACCTGTTGCGCTTGACGTCGTTGTTGATGGCACAGTTCCTCAAG                         GCTCTGGACTGTCAAGCTCAGCAGCATTTGTCTGTTCAGCAACAATTGCTA
genomic: GGGCAAACCTGTTGCGCTTGACGTCGTTGTTGATGGCACAGTTCCTCAAGgtttgattta ... ctcctgttagGCTCTGGACTGTCAAGCTCAGCAGCATTTGTCTGTTCAGCAACAATTGCTA
EST: gi|74244484|gb|DT652398.1|DT652398
EST:     GGGCAAACCTGTTGCGCTTGACGTCGTTGTTGATGGCACAGTTCCTCAAG                         GCTCTGGACTGTCAAGCTCAGCAGCATTTGTCTGTTCAGCAACAATTGCTA
genomic: GGGCAAACCTGTTGCGCTTGACGTCGTTGTTGATGGCACAGTTCCTCAAGgtttgattta ... ctcctgttagGCTCTGGACTGTCAAGCTCAGCAGCATTTGTCTGTTCAGCAACAATTGCTA
EST: gi|108824283|gb|EC278291.1|EC278291
EST:     GGGCAAACCTGTTGCGCTTGACGTCGTTGTTGATGGCACAGTTCCTCAAG                         GCTCTGGACTGTCAAGCTCAGCAGCCTTTGTCTGTTCAGCAACAATTGCTA
genomic: GGGCAAACCTGTTGCGCTTGACGTCGTTGTTGATGGCACAGTTCCTCAAGgtttgattta ... ctcctgttagGCTCTGGACTGTCAAGCTCAGCAGCATTTGTCTGTTCAGCAACAATTGCTA