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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAACAAGTAAGGTCCAAATGGATTTAATGGAGATGCTCCACATCCCGAGATGCATCAAGTTTGTCAGCACAGTTAACAGGCCCAACCTTTTTTATAAGgtatatgcatttcctcaattgcaagttctgatagttttgtattccttattcatttgtgagaagtattgtgcacaagagtaaaacaggattttttgaaatcttgtttaccatgtag

Basic information

species Zea mays
transcript GRMZM2G451856_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G451856_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os11g48090.3 (Oryza sativa), 5'ss of exon 7
TGCAACAAGTAAGGTCCAAATGGATTTAATGGAGATGCTCCACATCCCGAGATGCATCAAGTTTGTCAGCACAGTTAACAGGCCCAACCTTTTTTATAAGgtatatgcatttcctcaattgcaagttctgatagttttgtattccttattcatttgtgagaagtattgtgcacaagagtaaaacaggattttttgaaatcttgtttaccatgtag
||| |||| ||| || ||||| ||||| || |||||||| || ||||| |||||  ||||||||||||||||| ||||||||||||||||||| ||||| ||||  || ||| ||||||| ||| |   |  |  |   |       |   |||| ||  || |         |||| ||  |||  ||||   ||| |     |||  |     
TGCGACAAATAAAGTGCAAATTGATTTGATAGAGATGCTTCATATCCCTAGATGTGTCAAGTTTGTCAGCACAATTAACAGGCCCAACCTTTTCTATAAAgtat--gccttttctcaatttcaaatcgaggaaaatccatccataccacagattt-tgccaaattca------aagaataccacaaaatttgg-gaagtgccaattaata-----

upper sequence: GRMZM2G451856_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv02s0087g00070.t01 (Vitis vinifera), 5'ss of exon 6
TGCAACAAGTAAGGTCCAAATGGATTTAATGGAGATGCTCCACATCCCGAGATGCATCAAGTTTGTCAGCACAGTTAACAGGCCCAACCTTTTTTATAAGgtatatgcatttcctcaattgcaagttctgatagttttgtattccttattcatttgtgagaagtattgtgcacaagagtaaaacaggattttttgaaatcttgtttaccatgtag
 ||||| |  ||||||||||  ||| | ||||| ||||| || ||||||| |||||| || |||||||||||||| ||  |||| || |||||||| | ||| ||    |||      | | || || ||     ||| || |||| |    |   ||     |  | ||      ||| |   ||  ||  | | | |   |            
AGCAACGAAGAAGGTCCAAAATGATCTTATGGAAATGCTGCATATCCCGAAATGCATTAAATTTGTCAGCACAGTGAATCGGCCAAATCTTTTTTACATGgtgta---gtttt-----tggtaacttatg-----tttttagtcctaacatttgcttgctggatgatctgagtggtagtcatgtag--ttcctcgtattgcag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60348558|gb|DN215531.1|DN215531
EST:     GATGCATCAAGTTTGTCAGCACAGTTAACAGGCCCAACCTTTTTTATAAG                         GTGTCTGAGAAATCGCCAGTTGGAAAGGTTGTCATTGATGAGATCACAAAG
genomic: GATGCATCAAGTTTGTCAGCACAGTTAACAGGCCCAACCTTTTTTATAAGgtatatgcat ... taccatgtagGTGTCTGAGAAATCGCCAGTTGGAAAGGTTGTCATTGATGAGATCACAAAG