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TTACAAACTTGTGGTGTCCTCAGCAGAGCCTAGAAAAGTGTCATCTCCGACCATTTCTAATATCCAGgtagcctttcttataaaatcaatttactttcagttaaaatgtgctttatttccttaaattaacattgtggggtttccccttctgaagcagctaaataaac...
species | Zea mays |
transcript | GRMZM2G451366_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCTCAGCAGAGCCTAGAAAAGTGTCATCTCCGACCATTTCTAATATCCAG GGATGGTTACCTGGATTGAAAAGGAGAGGGTGATAGTGAACAGCTTCCGACEST: gi|211228910|gb|FK998504.1|FK998504
genomic: CCTCAGCAGAGCCTAGAAAAGTGTCATCTCCGACCATTTCTAATATCCAGgtagcctttc ... tgagttgcagGGATGGTTACCTGGATTGAAA-GGAGAGGGTGATAGTGAACAGCTTCCGAC
EST: CCTCAGCAGAGCCTAGAAAA-TGTCATCTCCGAACATTTCTAA-ATCCAG GGATGGGTACCTGGATGGAAAGGAEST: gi|211226850|gb|FK998490.1|FK998490
genomic: CCTCAGCAGAGCCTAGAAAAGTGTCATCTCCGACCATTTCTAATATCCAGgtagcctttc ... tgagttgcagGGATGGTTACCTGGATTGAAAGGA
EST: CTCAGCAGAGCCTTAGAAAAGTGTCATCTCCGAACATTTCTAATATCCAG GGGATGGTTACCTEST: gi|148957547|gb|EC903641.2|EC903641
genomic: CTCAGCAGAGCCT-AGAAAAGTGTCATCTCCGACCATTTCTAATATCCAGgtagcctttc ... tgagttgcagGG-ATGGTTACCT
EST: CCTCAGCAGAGCCTAGAAAAGTGTCATCTCCGACCATTTCTAATATCCAG GGATGGTTACCTGGATTGAAAGGAGAGGGTGATAGTGAACAGCTTCCGACTEST: gi|71326877|gb|DR800096.1|DR800096
genomic: CCTCAGCAGAGCCTAGAAAAGTGTCATCTCCGACCATTTCTAATATCCAGgtagcctttc ... tgagttgcagGGATGGTTACCTGGATTGAAAGGAGAGGGTGATAGTGAACAGCTTCCGACT
EST: CCTCAGCAGAGCCTAGAAAAGTGTCATCTCCGACCATTTCTAATATCCAG GGATGGTTACCTGGATTGAAAGGAGAGGGTGATAGTGAACAGCTTCCGACTEST: gi|60339357|gb|DN206330.1|DN206330
genomic: CCTCAGCAGAGCCTAGAAAAGTGTCATCTCCGACCATTTCTAATATCCAGgtagcctttc ... tgagttgcagGGATGGTTACCTGGATTGAAAGGAGAGGGTGATAGTGAACAGCTTCCGACT
EST: CCTCAGCAGAGCCTAGAAAAGTGTCATCTCCGACCATTTCTAATATCCAG GGATGGTTACCTGGATTGAAAGGAGAGGGTGATAGTGAACAGCTTCCGACTEST: gi|211228901|gb|FK998495.1|FK998495
genomic: CCTCAGCAGAGCCTAGAAAAGTGTCATCTCCGACCATTTCTAATATCCAGgtagcctttc ... tgagttgcagGGATGGTTACCTGGATTGAAAGGAGAGGGTGATAGTGAACAGCTTCCGACT
EST: CCTCAGCAGAGCCTAGAAAAGTGTCATCTCCGACCATT-CTAATATCCAG GGGATG-TTACCEST: gi|50335646|gb|CO530772.1|CO530772
genomic: CCTCAGCAGAGCCTAGAAAAGTGTCATCTCCGACCATTTCTAATATCCAGgtagcctttc ... tgagttgcagGG-ATGGTTACC
EST: CCTCAGCAGAGCCTAGAAAAGTGTCATCTCCGACCATTTCTAATATCCAG GGATGGTTACCTGGATTGAAAGGAGAGGGTGATAGTGAACAGCTTCCGACTEST: gi|32921841|gb|CF026653.1|CF026653
genomic: CCTCAGCAGAGCCTAGAAAAGTGTCATCTCCGACCATTTCTAATATCCAGgtagcctttc ... tgagttgcagGGATGGTTACCTGGATTGAAAGGAGAGGGTGATAGTGAACAGCTTCCGACT
EST: CCTCAGCAGAGCCTAGAAAAGTGTCATCTCCGACCATTTCTAATATCCAG GGATGGTTACCTGGATTGAAAGGAGAGGGTGATAGTGAACAGCTTCCGACTEST: gi|71440389|gb|DR821439.1|DR821439
genomic: CCTCAGCAGAGCCTAGAAAAGTGTCATCTCCGACCATTTCTAATATCCAGgtagcctttc ... tgagttgcagGGATGGTTACCTGGATTGAAAGGAGAGGGTGATAGTGAACAGCTTCCGACT
EST: CCTCAGCAGAGCCTAGAAAAGTGTCATCTCCGACCATTTCTAATATCCAG GGATGGTTACCTGGATTGAAAGGAGAGGGTGATAGTGAACAGCTTCCGACTEST: gi|61119699|gb|DN560660.1|DN560660
genomic: CCTCAGCAGAGCCTAGAAAAGTGTCATCTCCGACCATTTCTAATATCCAGgtagcctttc ... tgagttgcagGGATGGTTACCTGGATTGAAAGGAGAGGGTGATAGTGAACAGCTTCCGACT
EST: CCATTTCTAATATCCAG GGATGGTTACCTGGATTGAAAGGAGAGGGTGATAGTGAACAGCTTCCGACT
genomic: CCATTTCTAATATCCAGgtagcctttc ... tgagttgcagGGATGGTTACCTGGATTGAAAGGAGAGGGTGATAGTGAACAGCTTCCGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACAAACTTGTGGTGTCCTCAGCAGAGCCTAGAAAAGTGTCATCTCCGACCATTTCTAATATCCAGgtagcctttcttataaaatcaatttactttcagttaaaatgtgctttatttccttaaattaacattgtggggtttccccttctgaagcagctaaataaac
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