Sequence
atgc intronic sequence ATGC exonic sequenceCAGCAAAGAATACCGAGAGTATTTCTCGAGATCATGTTGTATTTGAAGACTACCCCGGGTTAATAACAATTACCGGTGGAAAATGGACAACCTATAGGAGgtaaggtctacctaattgctactataatttatttgtagaagtgatggatggaactggagtgacctggtcaagctttcagcattgccaatttattagtggg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G446108_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g14790.1 (Oryza sativa), 5'ss of exon 4
CAGCAAAGAATACCGAGAGTATTTCTCGAGATCATGTTGTATTTGAAGACTACCCCGGGTTAATAACAATTACCGGTGGAAAATGGACAACCTATAGGAGgtaaggtctacctaattgctactataatttatttgtagaagtgatggatggaactggagtgacctggtcaagctttcagcattgccaatttattagtggg------
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CGGCAAAAAATACTGAGAGCATTTCCAGAGATCATGTTGTATTTGAAGACTACCCAGGACTAATAACTATCACTGGTGGAAAATGGACAACTTATAGAAGgtatggtgt-tctaggagctagtgt--tttatctctaattg-attgaatgaaactgatatgacatgtgcaaagct--aggttttctactctggctatgggcccgtt
upper sequence: GRMZM2G446108_T03 (Zea mays), 5'ss of exon 4
lower sequence: Vv13s0019g04730.t01 (Vitis vinifera), 5'ss of exon 4
CAGCAAAGAATACCGAGAGTATTTCTCGAGATCATGTTGTATTTGAAGACTACCCCGGGTTAATAACAATTACCGGTGGAAAATGGACAACCTATAGGAGgtaaggtctacctaattgctactataatttatttgtagaagtgatggatggaactgga--gtgacctggt----caagctttcagcattgccaatttattagtggg
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AGGCGAAAAGCACTGAGAGCATTTCCCGAGATCATGTTGTATGTGAAGATCATCCTGGGTTAGTCACAATCACAGGTGGAAAATGGACCACTTATCGGAGgtaaattttatcttagatgacctggaaattgtctatcaaaccatttagtagatttcattcattgtcaggtggaataagttatccagctagggaattttcc------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|89106200|gb|DY576417.1|DY576417EST: TACCCCGGGTTAATTACAATTACCGGTGGAAAATGGACAACCTATAGGAG TATGGCTGAAGATGCTGTAAATGCAGCAGTCATGT
genomic: TACCCCGGGTTAATAACAATTACCGGTGGAAAATGGACAACCTATAGGAGgtaaggtcta ... gtttgttcagTATGGCTGAAGATGCTGTAAATGCAGCAGTCATGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGCAAAGAATACCGAGAGTATTTCTCGAGATCATGTTGTATTTGAAGACTACCCCGGGTTAATAACAATTACCGGTGGAAAATGGACAACCTATAGGAGgtaaggtctacctaattgctactataatttatttgtagaagtgatggatggaactggagtgacctggtcaagctttcagcattgccaatttattagtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA