1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTAGAAGACGACGCACAGGTAGCACTTGAGCCGGCAAGAAGTACGGAGCAGGAAACCAGTAGGCCGCCAGAGAGGgtgcggagttttaagcatctcgcacttgtttttttccttcgcttttgtcctctcgactgtcacaacatgttttcagaacgtataaatctaaaatgatttgcctcattag
species | Zea mays |
transcript | GRMZM2G445575_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGAGCCGGCAAGAAGTACGGAGCAGGAAACCAGTAGGCCGCCAGAGAGG GCCCAGAGAAGGCTCGCGCAGACCAGAGAAGCTGCTEST: gi|94477975|gb|EB706933.1|EB706933
genomic: TTGAGCCGGCAAGAAGTACGGAGCAGGAAACCAGTAGGCCGCCAGAGAGGgtgcggagtt ... gcctcattagGCCCAGAGAAGGCTCGCGCAGAACAGAGAGGCTGCT
EST: TTGAGCCGGCAAGAAGTACGGAGCAGGAAACCAGTAGGCCGCCAGAGAGG GCCCAGAGAAGGCTCGCGCAGAACAGAGAGGCTGCTCGGAAGAGTCGCCTGEST: gi|148955465|gb|EC901061.2|EC901061
genomic: TTGAGCCGGCAAGAAGTACGGAGCAGGAAACCAGTAGGCCGCCAGAGAGGgtgcggagtt ... gcctcattagGCCCAGAGAAGGCTCGCGCAGAACAGAGAGGCTGCTCGGAAGAGTCGCCTG
EST: TTGAGCCGGCAAGAAGTACGGAGCAGGAAACCAGTAGGCCGCCAGAGAGG GCCCAGAGAAGGCTCGCGCAGAACAGAGAGGCTGCTCGGAAGAGTCGCCTGEST: gi|148999148|gb|EE036061.2|EE036061
genomic: TTGAGCCGGCAAGAAGTACGGAGCAGGAAACCAGTAGGCCGCCAGAGAGGgtgcggagtt ... gcctcattagGCCCAGAGAAGGCTCGCGCAGAACAGAGAGGCTGCTCGGAAGAGTCGCCTG
EST: TTGAGCCGGCAAGAAGTACGGAGCAGGAAACCAGTAGGCCGCCAGAGAGG GCCCAGAGAAGGCTCGCGCAGAACAGAGAGGCTGCTCGGAAGAGTCGCCTGEST: gi|149079352|gb|EE168328.2|EE168328
genomic: TTGAGCCGGCAAGAAGTACGGAGCAGGAAACCAGTAGGCCGCCAGAGAGGgtgcggagtt ... gcctcattagGCCCAGAGAAGGCTCGCGCAGAACAGAGAGGCTGCTCGGAAGAGTCGCCTG
EST: TTGAGCCGGCAAGAAGTACGGAGCAGGAAACCAGTAGGCCGCCAGAGAGG GCCCAGAGAAGGCTCGCGCAGAACAGAGAGGCTGCTCGGAAGAGTCGCCTGEST: gi|148933922|gb|EC877905.2|EC877905
genomic: TTGAGCCGGCAAGAAGTACGGAGCAGGAAACCAGTAGGCCGCCAGAGAGGgtgcggagtt ... gcctcattagGCCCAGAGAAGGCTCGCGCAGAACAGAGAGGCTGCTCGGAAGAGTCGCCTG
EST: TTGAGCCGGCAAGAAGTACGGAGCAGGAAACCAGTAGGCCGCCAGAGAGG GCCCAGAGAAGGCTCGCGCAGAACAGAGAGGCTGCTCGGAAGAGTCGCCTGEST: gi|148969929|gb|EE020834.2|EE020834
genomic: TTGAGCCGGCAAGAAGTACGGAGCAGGAAACCAGTAGGCCGCCAGAGAGGgtgcggagtt ... gcctcattagGCCCAGAGAAGGCTCGCGCAGAACAGAGAGGCTGCTCGGAAGAGTCGCCTG
EST: TTGAGCCGGCAAGAAGTACGGAGCAGGAAACCAGTAGGCCGCCAGAGAGG GCCCAGAGAAGGCTCGCGCAGAACAGAGAGGCTGCTCGGAAGAGTCGCCTGEST: gi|74235598|gb|DT643512.1|DT643512
genomic: TTGAGCCGGCAAGAAGTACGGAGCAGGAAACCAGTAGGCCGCCAGAGAGGgtgcggagtt ... gcctcattagGCCCAGAGAAGGCTCGCGCAGAACAGAGAGGCTGCTCGGAAGAGTCGCCTG
EST: TTGAGCCGGCAAGAAGTACGGAGCAGGAAACCAGTAGGCCGCCAGAGAGG GCCCAGAGAAGGCTCGCGCAGAACAGAGAGGCTGCTCGGAAGAGTCGCCTGEST: gi|149000175|gb|EE037312.2|EE037312
genomic: TTGAGCCGGCAAGAAGTACGGAGCAGGAAACCAGTAGGCCGCCAGAGAGGgtgcggagtt ... gcctcattagGCCCAGAGAAGGCTCGCGCAGAACAGAGAGGCTGCTCGGAAGAGTCGCCTG
EST: TTGAGCCGGCAAGAAGTACGGAGCAGGAAACCAGTAGGCCGCCAGAGAGG GCCCAGAGAAGGCTCGCGCAGAACAGAGAGGCTGCTCGGAAGAGTCGCCTG
genomic: TTGAGCCGGCAAGAAGTACGGAGCAGGAAACCAGTAGGCCGCCAGAGAGGgtgcggagtt ... gcctcattagGCCCAGAGAAGGCTCGCGCAGAACAGAGAGGCTGCTCGGAAGAGTCGCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTAGAAGACGACGCACAGGTAGCACTTGAGCCGGCAAGAAGTACGGAGCAGGAAACCAGTAGGCCGCCAGAGAGGgtgcggagttttaagcatctcgcacttgtttttttccttcgcttttgtcctctcgactgtcacaacatgttttcagaacgtataaatctaaaatgatttgcctcattag
- - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG