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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGATGTTTCTGTCGAAGCGGAAACAGGTAAAATGTACAGGGCAAGTTTCCGAGACAGGGAGGGCAGAACTGTTGTTGTCATGAAACCTACAAAACAAgtaagaagttctctcttctaaaatgccgcccttgctattcttttctagtttcggaaaattttcaggtctcccgagcttcctgaactcaggattcacctgtatgctatttcgaaatttcag

Basic information

species Zea mays
transcript GRMZM2G443453_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G443453_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g51430.2 (Oryza sativa), 5'ss of exon 4
CCTGATGTTTCTGTCGAAGCGGAAACAGGTAAAATGTACAGGGCAAGTTTCCGAGACAGGGAGGGCAGAACTGTTGTTGTCATGAAACCTACAAAACAAgtaagaagttctctcttctaaaatgccgcccttgctattcttttctagtttcggaaaattttcaggtctcccgagcttcctgaactcaggattcacctgtatgctatttcgaaatttcag
|| ||  ||||||| ||| | |||||||||||||||||||| ||||||||   ||| || ||||| |||||||| ||  | |||| |||  |||| || |||||||        ||||  |    || ||||  ||  ||||||    ||| |||||   | | |  |||     |  |||     |  |||||                         
CCCGAGATTTCTGTTGAATCAGAAACAGGTAAAATGTACAGAGCAAGTTTTGTAGATAGAGAGGGGAGAACTGTCGTCATTATGAGACCCGCAAAGCAGgtaagaa--------ttctgtacgagcgtccttcttagccttttc-gccttcagaaaaagctaatgcttccta--ttcactgtttcaaacattcag------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29543813|gb|CB604193.1|CB604193
EST:     TCCGAGACAGGGAGGGCAGAACTGTTGTTGTCATGAAACCTACAAAACAA                         AATACTTCATCCCATGAAGGGCAGATACGGTTCCTAGTATATACTTTGGAG
genomic: TCCGAGACAGGGAGGGCAGAACTGTTGTTGTCATGAAACCTACAAAACAAgtaagaagtt ... gaaatttcagAATACTTCATCCCATGAAGGGCAGATACGGTTCCTAGTATATACTTTGGAG
EST: gi|89761846|gb|DY689697.1|DY689697
EST:     TCCGAGACAGGGAGGGCAGAACTGTTGTTGTCATGAAACCTACAAAACAA                         AATACTTCATCCCATGAAGGGCAGATACGGTTCCTAGTATATACTTTGGAG
genomic: TCCGAGACAGGGAGGGCAGAACTGTTGTTGTCATGAAACCTACAAAACAAgtaagaagtt ... gaaatttcagAATACTTCATCCCATGAAGGGCAGATACGGTTCCTAGTATATACTTTGGAG