1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' |
ACTTCTAGAAGAGACTGAAAAGGCTGTTGGTGACCCTGATTTACCTATTCAGCATCGCCAACTTGTAGAGAGAAGTAAGGAACTGAAAGCGTTTGAAGTGgtaatgccaatcttgctcatatgatgtttgtttgcttggaagttttaagcttacctgaccctttcagaaacagtttgttaggctctatcagtttactgtttatcatctgctcaattttttag
species | Zea mays |
transcript | GRMZM2G440916_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGCATCGCCAACTTGTAGAGAGAAGTAAGGAACTGAAAGCGTTTGAAGTG GCTATAAGGCAAAACGAACAGACTTTGAATAATTTGAEST: gi|211293505|gb|FL223352.1|FL223352
genomic: AGCATCGCCAACTTGTAGAGAGAAGTAAGGAACTGAAAGCGTTTGAAGTGgtaatgccaa ... aattttttagGCTATAAGGCAAAACGAACAGACTTTGAATAATTTGA
EST: GCATCGCCAACTTGTAGAGAGAAATAAGGAACTGAAAGCGTTTTGAAGTG GCTATAAGGCAAAACGAAAAGACTTTGAATAAATTTGAAGGCCCTCAATGEST: gi|211276647|gb|FL478165.1|FL478165
genomic: GCATCGCCAACTTGTAGAGAGAAGTAAGGAACTGAAAGCGTTT-GAAGTGgtaatgccaa ... aattttttagGCTATAAGGCAAAACGAACAGACTTTGAATAA-TTTGAAGGCCCTCAATG
EST: AGCATCGCCAACTTGTAGAGAGAAGTAAGGAACTGAAAGCGTTTGAAGTG GCTATAAGGCAAAACGAACAGACTTTGAATAATTTGAAGGCCCTCAATGCTEST: gi|211276646|gb|FL478164.1|FL478164
genomic: AGCATCGCCAACTTGTAGAGAGAAGTAAGGAACTGAAAGCGTTTGAAGTGgtaatgccaa ... aattttttagGCTATAAGGCAAAACGAACAGACTTTGAATAATTTGAAGGCCCTCAATGCT
EST: AGCATCGCCAACTTGTAGAGAGAAGTAAGGAACTGAAAGCGTTTGAAGTG GCTATAAGGCAAAACGAACAGACTTTGAATAATTTGAAGGCCCTCAATGCTEST: gi|211445136|gb|FL478285.1|FL478285
genomic: AGCATCGCCAACTTGTAGAGAGAAGTAAGGAACTGAAAGCGTTTGAAGTGgtaatgccaa ... aattttttagGCTATAAGGCAAAACGAACAGACTTTGAATAATTTGAAGGCCCTCAATGCT
EST: AGCATCGCCAACTTGTAGAGAGAAGTAAGGAACTGAAAGCGTTTGAAGTG GCTATAAGGCAAAACGAACAGACTTTGAATAATTTGAAGGCCCTCAATGCT
genomic: AGCATCGCCAACTTGTAGAGAGAAGTAAGGAACTGAAAGCGTTTGAAGTGgtaatgccaa ... aattttttagGCTATAAGGCAAAACGAACAGACTTTGAATAATTTGAAGGCCCTCAATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTCTAGAAGAGACTGAAAAGGCTGTTGGTGACCCTGATTTACCTATTCAGCATCGCCAACTTGTAGAGAGAAGTAAGGAACTGAAAGCGTTTGAAGTGgtaatgccaatcttgctcatatgatgtttgtttgcttggaagttttaagcttacctgaccctttcagaaacagtttgttaggctctatcagtttactgtttatcatctgctcaattttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG