Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGTTGCACACTAAAGATAAGGAGTGTGTGGTTGTTCTTGGTGTTACAAATAGACCTTTTGACCTGGACGAGGCTGTGATTAGGAGGTTCCCCCGTAGgtaaatgttgtttcattcagtgggactggattacccagttgcataactgtagttttgttctgtgggccatggttatctaattgttgcttttgggtagcaatagtttcgtttggttgggtgggactatcaaatcgctgctgctggttccatattcatcaccatcttactcattgtttcag

Basic information

species Zea mays
transcript GRMZM2G435582_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G435582_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os11g43970.1 (Oryza sativa), 5'ss of exon 24
ATGGGTTGCACACTAAAGATAAGGAGTGTGTGGTTGTTCTTGGTGTTACAAATAGACCTTTTGACCTGGACGAGGCTGTGATTAGGAGGTTCCCCCGTAGgtaaatgttgtttcatt-cagtgggactggattacccagttgcataactgtagttttgttctgtgggccatggttatctaattgttgcttttgggtagcaatagtttcgtttggttgggtgggactatcaaatcgctgctgctggttccatattcatcaccatcttactcattgtttcag
|||| || | |||||||||||| ||  ||||  | ||||||||||  |||||||| ||||| |||||||| |||||||| |||||||||||||| || |||| |  | | |  | ||    ||||  |||  ||   |     ||  ||||  | ||| | | |   |  | | |   |||||  | || | |                                                                                       
ATGGATTACGCACTAAAGATAAAGAACGTGTACTGGTTCTTGGTGCCACAAATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagctataaccttgtgttggggttgggataatgaa--aaattgctgtt-tgttgatttctaaccatttggtcgttaattactactgtag---------------------------------------------------------------------------------------

upper sequence: GRMZM2G435582_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA02G17400.1 (Glycine max), 5'ss of exon 20
ATGGGTTGCACACTAAAGATAAGGAGTGTGTGGTTGTTCTTGGTGTTACAAATAGACCTTTTGACCTGGACGAGGCTGTGATTAGGAGGTTCCCCCGTAGgtaaatgttgtttcattcagtgggactggattacccagttgcataactgtagttttgttctgtgggccatggttatctaattgttgcttttgggt-agcaatagtttcgtttggttgggtgggactatcaaatcgctgctgctggttccatattcatcaccatcttactcattgtttcag
|||| |||   || |||||||| ||| || |  ||||||||| || |||||||||||||||||| || || |||||||| ||||||||  | || || |||||||  | |||   ||   ||        ||| |   ||  ||  | ||  |||     || |  | |||     ||||||  || | || | | |  |||| | | |                                                                       
ATGGTTTGAGAACAAAAGATAAAGAGCGTATACTTGTTCTTGCTGCTACAAATAGACCTTTTGATCTTGATGAGGCTGTTATTAGGAGACTTCCACGAAGgtaaac-tcgttatgtttgatg--------ttaacttcttttatttc-gtgttttacaaatgagatctatg-----ctaattcgtgttctttgttgaaaaatattgtag-----------------------------------------------------------------------

upper sequence: GRMZM2G435582_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA10G02410.1 (Glycine max), 5'ss of exon 20
ATGGGTTGCACACTAAAGATAAGGAGTGTGTGGTTGTTCTTGGTGTTACAAATAGACCTTTTGACCTGGACGAGGCTGTGATTAGGAGGTTCCCCCGTAGgtaaatgttgtttcattcagtgggactggattacccagttgcataactgtagttttgttctgtgggccatggttatctaattgttgcttttgggtagcaatagtttcgtttggttgggtgggactatcaaatcgctgctgctggttccatattcatcaccatcttactcattgtttcag
|||| ||||  || |||||||| ||| || |  |||||||||  | |||||||||||||||||| || || |||||||| ||||||||  | || || |||||||  |  ||   ||   ||        | | |   ||  ||  | ||  ||      || |  | ||| | || |   ||||  || | |  |  ||| ||                                                                           
ATGGTTTGCGAACAAAAGATAAAGAGCGTATACTTGTTCTTGCGGCTACAAATAGACCTTTTGATCTTGATGAGGCTGTTATTAGGAGACTTCCACGAAGgtaaac-tcattatgtttgatg--------tcagcttcttttatttc-gtgtttcacaaatgagatctatgctaatttg--tgttctttcttgaaaaaaattgtag-------------------------------------------------------------------------

upper sequence: GRMZM2G435582_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT4G24860.1 (Arabidopsis thaliana), 5'ss of exon 23
ATGGGTTGCACACTAAAGATAAGGAGTGTGTGGTTGTTCTTGGTGTTACAAATAGACCTTTTGACCTGGACGAGGCTGTGATTAGGAGGTTCCCCCGTAGgtaaatgttgtttcattcagtgggactggattacccagttgcataactgtagttttgttctgtgggccatggttatctaattgt-tgcttttgggtagcaatagtttcgtttggttgggtgggactatcaaatcgctgctgctggttccatattcatcaccatcttactcattgtttcag
| ||  |    ||| | || | |||  ||||  | || ||||  |  |||||| | ||||||||||| || |||||||| |||||  |||| ||||||||||||||  |   ||  |   | |||||    |      |||   || ||   |     | | | ||   ||   || |  | || |    ||  | ||                                                                                  
ACGGTCTTACGACTCAGGAAAGGGAACGTGTTCTGGTCCTTGCAGCCACAAATCGGCCTTTTGACCTTGATGAGGCTGTTATTAGACGGTTGCCCCGTAGgtaaattataaatcgcttccttggactaagcttttt--ttgttaaattgacatgacagt-tataggttgtgaaaattttgtggtattgacttctgcag----------------------------------------------------------------------------------

upper sequence: GRMZM2G435582_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT1G62130.1 (Arabidopsis thaliana), 5'ss of exon 23
ATGGGTTGCACACTAAAGATAAGGAGTGTGTGGTTGTTCTTGGTGTTACAAATAGACCTTTTGACCTGGACGAGGCTGTGATTAGGAGGTTCCCCCGTAGgtaaatgttgtttcattcagtgggactggattacccagttgcataactgtagttttgttctgtgggccatggttatctaattgttgcttttgggtagcaatagtttcgtttggttgggtgggactatcaaatcgctgctgctggttccatattcatcaccatcttactcattgtttcag
| ||  ||   || || || |||||  ||||  | |||||||  |  |||||||||||||||||||| ||||||||||| ||||| ||||| || | ||||||| |  | | |   |   | |   |||| ||   || |      ||||    |||   ||| |   |    | | |  |  | |||| ||                                                                                       
ACGGTCTGAGGACAAATGAAAAGGAACGTGTTCTGGTTCTTGCAGCCACAAATAGACCTTTTGACCTTGACGAGGCTGTCATTAGAAGGTTGCCTCATAGgtaatttatatatagcttccttg--ttggacta---agcttt----ctgtcaaattgacatgtcg-taacaagtttttggtattggcttctgcag------------------------------------------------------------------------------------

upper sequence: GRMZM2G435582_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 24
ATGGGTTGCACACTAAAGATAAGGAGTGTGTGGTTGTTCTTGGTGTTACAAATAGACCTTTTGACCTGGACGAGGCTGTGATTAGGAGGTTCCCCCGTAGgtaaa----tgttgtttcattcagtgggactggattaccc-agttgcataa-ctgtagttttgttctgtgggccatggttatctaattgttgcttttgggtagcaatagtttcgtttggttgggtgggactatcaaatcgctgctgctggttccatattcatcaccatcttactcattgtttcag
|||| |||| ||| |||||||  ||  | ||  | || ||||  |  |||||||||||||||||||| || |||||||| ||||| ||||| || |||||||||        ||   ||||  || |||||    |||   | || || || |||    || ||||| |  |  ||||||      ||   |                                                                                             
ATGGCTTGCGCACAAAAGATACCGAAAGGGTTCTGGTGCTTGCAGCCACAAATAGACCTTTTGACCTTGATGAGGCTGTTATTAGAAGGTTGCCGCGTAGgtaaggcatcactgagccattttgttggactatcctactttatttccacaaactgggacttagttct-tctgtaatggttcatcttttacag---------------------------------------------------------------------------------------------