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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCACCACCGCCGTCGCCACCTGGGACGCCGACTTCTACGTCAAGGTCGACGACGACATCCACCTCAACCTCGGTGCGTATACGTACGTACTACGTGCTCgctgctgctgctgccatcatttatattgcagcgactcgtgtgtcattgtcaagtcgaacgtcgttacagggtgggtgtactactacacgccgtgagtctctgaagaaattcgcttccaatccaactgcagggatgctgacgagcag

Basic information

species Zea mays
transcript GRMZM2G431006_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G431006_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g65590.1 (Oryza sativa), 5'ss of exon 5
---------------------------TTCACCACCGCCGTCGCCACCTGGGACGCCGACTTCTACGTCAAGGTCGACGACGACATCCACCTCAACCTCGGTGCGTATACGTACGTACTACGTGCTCgctgctgctgctgccatcatttatattgcagcgactcgtgtgtcattgtcaagtcgaacgtcgttacagggtgggtgtactactacacgccgtgagtctctgaagaaattcgcttccaatccaactgcagggatgctgacgagcag
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||          | | || | |    | |   |       |||| ||| ||  |  |   |          ||  | |  |||| | | |||   |  ||  || || | |   ||  |                                                      
GAGCTGTCCTCCAAGACCAGGGTCTACTTCACCACCGCCGTCGCCACCTGGGACGCCGACTTCTACGTCAAGGTCGACGACGACGTCCACGTCAACCTCGgta---------atgcaccatgcaaacacaaattaatacaccattattcatgctcgaataa----------ataataatctcgatc-ttgttcgtgaatgaatgaacaaattttcgttgcag---------------------------------------------------