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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGGAAGTTCCTTGAACTCAGTTTTTCAAACCACTCAACCGCTAGAAGGCTGTCAATATGCGGGCATTCACTCAATACCGATTGTCTGCGCTTTTTTGGgtaagctcaaaacatcagctgcatttcataaattgttttgcttccaatgtattgtactaccttttctgttcatttatttgggatgtgtcaacttcag

Basic information

species Zea mays
transcript GRMZM2G428386_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G428386_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g59540.1 (Oryza sativa), 5'ss of exon 4
TTGGGAAGTTCCTTGAACTCAGTTTTTCAAACCACTCAACCGCTAGAAGGCTGTCAATATGCGGGCATTCACTCAATACCGATTGTCTGCGCTTTTTTGGgtaag----ctcaaaa--catcagctgcatttcataaattgttttgcttccaatgtattgtactaccttttctgttcatttatttgggatgt-gtcaacttcag
|||| |||||||||||||||||||| |||| ||||||  | ||||||||||| ||| | || |||||||   |||| |  || ||  |||| | ||||||||| |    ||||     ||  | ||   ||  | |  | || |              | || |||    || ||   || || |   |    ||  |||    
TTGGCAAGTTCCTTGAACTCAGTTTCTCAAGCCACTCTGCTGCTAGAAGGCTATCAGTTTGTGGGCATTTGGTCAACAGGGACTGCTTGCGATATTTTGGgtatgtattctcatttctcaagaactattttgaacatgtcgtgtaaaagttctctctatataatactccctccgtattttaatgtataacaccgttgact----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211402660|gb|FL023536.1|FL023536
EST:     CTGTCAATATGCGGGCATTCACTCAATACCGATTGTCTGCGCTTTTTTGG                         GTTGGGCTCCAAAGTTGCAATGTTCCAGTATTCCTCAGTCGAAATTTACAA
genomic: CTGTCAATATGCGGGCATTCACTCAATACCGATTGTCTGCGCTTTTTTGGgtaagctcaa ... tcaacttcagGTTGGGCTCCAAAGTTGCAATGTTCCAGTATTCCTCAGTCGAAATTTACAA