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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTGTTGCGAAGCTCTACAAGCATACGTTGAAGCGTTCTGAACTTCGAGATGAACTCTTTGCCCAGATTTCAAAACAAACACGTAACAATCCTGATAGgtgagttgggcttctcatggatggccatcatatgtgtacgtcattgtaggaatcatatattttattgtatgtgcag

Basic information

species Zea mays
transcript GRMZM2G423861_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G423861_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g57140.1 (Oryza sativa), 5'ss of exon 3
AACTTGTTGCGAAGCTCTACAAGCATACGTTGAAGCGTTCTGAACTTCGAGATGAACTCTTTGCCCAGATTTCAAAACAAACACGTAACAATCCTGATAGgt--gagttgggcttctcatggatggccatcatatgtg-tacg-tcattgtaggaatcatatattttattgtatgtgcag
|||||||||| ||||| ||||||||||| ||||| |||||||||||  ||||||| |||||||| ||||||||||||||||||||||||||||| || ||||  ||    |  ||||||||||| || ||   ||| | |||   |||  || ||||  |||  |||   |||  | |||
AACTTGTTGCAAAGCTTTACAAGCATACTTTGAAACGTTCTGAACTGAGAGATGAGCTCTTTGCACAGATTTCAAAACAAACACGTAACAATCCCGACAGgtatgaagcagatttctcatggatagcaattcgatgggatacaaccatcttatgaatgttattattt---gtacttacag

upper sequence: GRMZM2G423861_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA01G35950.1 (Glycine max), 5'ss of exon 5
AACTTGTTGCGAAGCTCTACAAGCATACGTTGAAGCGTTCTGAACTTCGAGATGAACTCTTTGCCCAGATTTCAAAACAAACACGTAACAATCCTGATAGgtgagttgggcttctcatggatg-gcca----tcatatgt----gtacgtcatt-gtaggaatcatatattttattgtatgtgcag-----------------------------------
| |||||||  || || |||||||| |  ||||||||||| ||||| |||||||||||||||| |||  | |||||||||||  | ||||  ||||| ||||   |  |  |  |||    || | ||    |||| | |    | || |  ||  | | ||    ||||||  |    | ||||                                    
AGCTTGTTGGTAAACTATACAAGCAAAGTTTGAAGCGTTCAGAACTCCGAGATGAACTCTTTGTCCAATTATCAAAACAAACGAGAAACAGCCCTGAGAGgtatctaagtttcttcagtagtgtgtcacgcttcatgttttcttggactttgttcattgaaactgaatatttgctgtggtttgcatgctagtgattaatactgttttggtctaaaaagcag

upper sequence: GRMZM2G423861_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 4
AACTTGTTGCGAAGCTCTACAAGCATACGTTGAAGCGTTCTGAACTTCGAGATGAACTCTTTGCCCAGATTTCAAAACAAACACGTAACAATCCTGATAGgtgagt-tgggcttctcatggatggccatcatatgtgtacgtcattgtaggaatcatatattttattgtatgtgcag-----------------------------------------------------
| ||||||| ||| || || ||||| || || |||||| | || || ||||| ||||| ||||| ||||||||||| |||||| | || |||||||||||||  |      | | |  | |   |   |   || |  | | |    |   |     |  | | ||||   |||||                                                      
AGCTTGTTGGGAAACTGTATAAGCAAACTTTAAAGCGTCCAGAGCTCCGAGACGAACTTTTTGCACAGATTTCAAAGCAAACAAGGAATAATCCTGATAGgtatgcacattccttttctagtatgatgtttgattttcatgac-ccattccatctgcacttctaattgctggtgcaaggactaaccttatttctttaatcatgctacctttattgcttctgaaaacacag