1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AACTGGTGGAGTATTTTGGAGGAAAAAGTAACCGATCTTGCGGAATCTGGGTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAGgtaagctaaacaacatcctctcttagatgaagcttagtagttgcagaagtctgaagtctgagttgttttttcacag
species | Zea mays |
transcript | GRMZM2G422938_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTTTACGTCAGTGTGGCTTCCTCCTCCA-CACAGTCATTATCTCGAGAAG GCTATCTACCACAGAATCTGGACTGGCTTGACTCATGTTATGGEST: gi|149089899|gb|EE179185.2|EE179185
genomic: GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAGgtaagctaaa ... tttttcacagGCTATCTACCACAGAATCTGTACTGCCTTGACTCATGTTATGG
EST: GTTTACGTCAGTGTGGCTTCCTCCTCCNACACAGTCATTATCTCGAGAAG GCTATCTACCACAGAATCTGTACTGCCTTGACTNCATGT-ATGGTTCCCTCEST: gi|148947022|gb|EC892319.2|EC892319
genomic: GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAGgtaagctaaa ... tttttcacagGCTATCTACCACAGAATCTGTACTGCCTTGACT-CATGTTATGGTTCCCTC
EST: GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAG GCTATCTACCACAGAATCTGTACTEST: gi|211338713|gb|FL158147.1|FL158147
genomic: GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAGgtaagctaaa ... tttttcacagGCTATCTACCACAGAATCTGTACT
EST: CGTCAGTGTGGCTTCCCTCCTTCCAAAACAGGCCATTATCCCCGAGGAAG GCTATCTTCCCACAGAATCTEST: gi|8516560|gb|BE123285.1|BE123285
genomic: CGTCAGTGTGGCTTCC-TCCT-CCAACACAGTC-ATTATCTC-GAG-AAGgtaagctaaa ... tttttcacagGCTATCTACC-ACAGAATCT
EST: GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAG GCTATCTACCACAGAATCTGTACTGCCTTGACTCATGTTATGGTTCCCTCCEST: gi|47962573|gb|CN845282.1|CN845282
genomic: GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAGgtaagctaaa ... tttttcacagGCTATCTACCACAGAATCTGTACTGCCTTGACTCATGTTATGGTTCCCTCC
EST: GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAG GCTATCTACCACAGAATCTGTACTGCCTTGACTCATGTTATGGTTCCCTCCEST: gi|89761789|gb|DY689662.1|DY689662
genomic: GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAGgtaagctaaa ... tttttcacagGCTATCTACCACAGAATCTGTACTGCCTTGACTCATGTTATGGTTCCCTCC
EST: GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAG GCTATCTACCACAGAATCTGTACTGCCTTGACTCATGTTATGGTTCCCTCCEST: gi|91051790|gb|EB162208.1|EB162208
genomic: GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAGgtaagctaaa ... tttttcacagGCTATCTACCACAGAATCTGTACTGCCTTGACTCATGTTATGGTTCCCTCC
EST: GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAG GCTATCTACCACAGAATCTGTACTGCCTTGACTCATGTTATGGTTCCCTCCEST: gi|31612368|gb|CD568990.1|CD568990
genomic: GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAGgtaagctaaa ... tttttcacagGCTATCTACCACAGAATCTGTACTGCCTTGACTCATGTTATGGTTCCCTCC
EST: GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAG GCTATCTACCACAGAATCTGTACTGCCTTGACTCATGTTATGGTTCCCTCC
genomic: GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAGgtaagctaaa ... tttttcacagGCTATCTACCACAGAATCTGTACTGCCTTGACTCATGTTATGGTTCCCTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTGGTGGAGTATTTTGGAGGAAAAAGTAACCGATCTTGCGGAATCTGGGTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAGgtaagctaaacaacatcctctcttagatgaagcttagtagttgcagaagtctgaagtctgagttgttttttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC