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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTGGTGGAGTATTTTGGAGGAAAAAGTAACCGATCTTGCGGAATCTGGGTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAGgtaagctaaacaacatcctctcttagatgaagcttagtagttgcagaagtctgaagtctgagttgttttttcacag

Basic information

species Zea mays
transcript GRMZM2G422938_T02
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149104327|gb|EE289772.2|EE289772
EST:     GTTTACGTCAGTGTGGCTTCCTCCTCCA-CACAGTCATTATCTCGAGAAG                         GCTATCTACCACAGAATCTGGACTGGCTTGACTCATGTTATGG
genomic: GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAGgtaagctaaa ... tttttcacagGCTATCTACCACAGAATCTGTACTGCCTTGACTCATGTTATGG
EST: gi|149089899|gb|EE179185.2|EE179185
EST:     GTTTACGTCAGTGTGGCTTCCTCCTCCNACACAGTCATTATCTCGAGAAG                         GCTATCTACCACAGAATCTGTACTGCCTTGACTNCATGT-ATGGTTCCCTC
genomic: GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAGgtaagctaaa ... tttttcacagGCTATCTACCACAGAATCTGTACTGCCTTGACT-CATGTTATGGTTCCCTC
EST: gi|148947022|gb|EC892319.2|EC892319
EST:     GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAG                         GCTATCTACCACAGAATCTGTACT
genomic: GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAGgtaagctaaa ... tttttcacagGCTATCTACCACAGAATCTGTACT
EST: gi|211338713|gb|FL158147.1|FL158147
EST:     CGTCAGTGTGGCTTCCCTCCTTCCAAAACAGGCCATTATCCCCGAGGAAG                         GCTATCTTCCCACAGAATCT
genomic: CGTCAGTGTGGCTTCC-TCCT-CCAACACAGTC-ATTATCTC-GAG-AAGgtaagctaaa ... tttttcacagGCTATCTACC-ACAGAATCT
EST: gi|8516560|gb|BE123285.1|BE123285
EST:     GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAG                         GCTATCTACCACAGAATCTGTACTGCCTTGACTCATGTTATGGTTCCCTCC
genomic: GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAGgtaagctaaa ... tttttcacagGCTATCTACCACAGAATCTGTACTGCCTTGACTCATGTTATGGTTCCCTCC
EST: gi|47962573|gb|CN845282.1|CN845282
EST:     GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAG                         GCTATCTACCACAGAATCTGTACTGCCTTGACTCATGTTATGGTTCCCTCC
genomic: GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAGgtaagctaaa ... tttttcacagGCTATCTACCACAGAATCTGTACTGCCTTGACTCATGTTATGGTTCCCTCC
EST: gi|89761789|gb|DY689662.1|DY689662
EST:     GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAG                         GCTATCTACCACAGAATCTGTACTGCCTTGACTCATGTTATGGTTCCCTCC
genomic: GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAGgtaagctaaa ... tttttcacagGCTATCTACCACAGAATCTGTACTGCCTTGACTCATGTTATGGTTCCCTCC
EST: gi|91051790|gb|EB162208.1|EB162208
EST:     GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAG                         GCTATCTACCACAGAATCTGTACTGCCTTGACTCATGTTATGGTTCCCTCC
genomic: GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAGgtaagctaaa ... tttttcacagGCTATCTACCACAGAATCTGTACTGCCTTGACTCATGTTATGGTTCCCTCC
EST: gi|31612368|gb|CD568990.1|CD568990
EST:     GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAG                         GCTATCTACCACAGAATCTGTACTGCCTTGACTCATGTTATGGTTCCCTCC
genomic: GTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAGgtaagctaaa ... tttttcacagGCTATCTACCACAGAATCTGTACTGCCTTGACTCATGTTATGGTTCCCTCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACTGGTGGAGTATTTTGGAGGAAAAAGTAACCGATCTTGCGGAATCTGGGTTTACGTCAGTGTGGCTTCCTCCTCCAACACAGTCATTATCTCGAGAAGgtaagctaaacaacatcctctcttagatgaagcttagtagttgcagaagtctgaagtctgagttgttttttcacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC