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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTTCTTGAATACGAAAAACACAAAGTCCGGACTGGTCAGCTTCAGATACCACCGCCTGGTTTACCACAGCCTAGTGGTGCTGACCGTGAGgtaaaccttttctttttagtaaaaagaattaacagtgcagctttaacttaaatttctaggtagttcttcgcacatatctatatattatttaaatggggtc...

Basic information

species Zea mays
transcript GRMZM2G421899_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G421899_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g48370.2 (Oryza sativa), 5'ss of exon 5
GCACTTCTTGAATACGAAAAACACAAAGTCCGGACTGGTCAGCTTCAGATACCACCGCCTGGTTTACCACAGCCTAGTGGTGCTGACCGTGAGgtaaaccttttctttttagtaaaaagaattaacagtgcagctttaacttaa-atttctaggtagttcttcgcacatatctatatattatttaaatggggtc-------
|||||||| || || |||||| |||||||||| ||||| ||||||||  |||||  | ||| ||||||||||||| ||||| ||| |||||||||||      |  || || ||       ||   |    |||| ||| |||  | |||    ||  | || |  ||   || || |  ||||||  ||  ||       
GCACTTCTCGAGTATGAAAAATACAAAGTCCGAACTGGCCAGCTTCAAGTACCATTGTCTGCTTTACCACAGCCTGGTGGTACTGGCCGTGAGgtaa------ttgttctaatagtgcagtttttaataagagctctaatttattaattcagtttatattttagttcaatactgtaca--atttaacgggattcaccctat