1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGTTTTGAAAGTCCAGTTTTGGGCTCCTGTGCTGGAAATATGAATAGGTCATTTCATTATTGGATGAAGATCTCGTTCAAGATGCTCCTTAAACTATCTGgtaattccatgaccttttttattttgaactaaagaaaataactgaagggaagaagtaaaaggataaaaatgtaccaagttgtctacatgcaaatgaatat...
species | Zea mays |
transcript | GRMZM2G417223_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTTCATTATTGGATGAAGATCTCGTTCAAGATGCTCCTTAAACTATCTG GTAATGATTTCAGCAAAGGATGAACCAGATGCACCTCTCTCTCCAGCTATGEST: gi|149078399|gb|EE167173.2|EE167173
genomic: ATTTCATTATTGGATGAAGATCTCGTTCAAGATGCTCCTTAAACTATCTGgtaattccat ... acctttgaagGTAATGATTTCAGCAAAGGATGAACCAGATGCACCTCTCTCTCCAGCTATG
EST: ATTTCATTATTGGATGAAGATCTCGTTCAAGATGCTCCTTAAACTATCTG GTAATGATTTCAGCAAAGGATGAACCAGATGCACCTCTCTCTCCAGCTATGEST: gi|31356029|gb|CD440386.1|CD440386
genomic: ATTTCATTATTGGATGAAGATCTCGTTCAAGATGCTCCTTAAACTATCTGgtaattccat ... acctttgaagGTAATGATTTCAGCAAAGGATGAACCAGATGCACCTCTCTCTCCAGCTATG
EST: ATTTCATTATTGGATGAAGATCTCGTTCAAGATGCTCCTTAAACTATCTG GTAATGATTTCAGCAAAGGATGAACCAGATGCACCTCTCTCTCCAGCTATGEST: gi|94478595|gb|EB707553.1|EB707553
genomic: ATTTCATTATTGGATGAAGATCTCGTTCAAGATGCTCCTTAAACTATCTGgtaattccat ... acctttgaagGTAATGATTTCAGCAAAGGATGAACCAGATGCACCTCTCTCTCCAGCTATG
EST: ATTTCATTATTGGATGAAGATCTCGCTCAAGATGCTCCTTAAACTATCTG GTAATGATTTCAGCAAAGGATGAACCAGATGCACCTCTCTCTCCAGCTATG
genomic: ATTTCATTATTGGATGAAGATCTCGTTCAAGATGCTCCTTAAACTATCTGgtaattccat ... acctttgaagGTAATGATTTCAGCAAAGGATGAACCAGATGCACCTCTCTCTCCAGCTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTTTGAAAGTCCAGTTTTGGGCTCCTGTGCTGGAAATATGAATAGGTCATTTCATTATTGGATGAAGATCTCGTTCAAGATGCTCCTTAAACTATCTGgtaattccatgaccttttttattttgaactaaagaaaataactgaagggaagaagtaaaaggataaaaatgtaccaagttgtctacatgcaaatgaatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaatgaa