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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTAGTGCCATCTTCGCAAGCTGGCAGCCTTATTGGCAAGCAGGGAGCAACTATTAAATCAATACAAGATTCTTCAAAATCTATTGTCCGTATTGTTGgtaagttttgtcatgtttctttatttagttactgtggaatttagtctgtttaactgattgaccatgaaacttgagaagtaaatgatgttatagttttttt...

Basic information

species Zea mays
transcript GRMZM2G417223_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G417223_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g42900.1 (Oryza sativa), 5'ss of exon 3
CTTCTAGTGCCATCTTCGCAAGCTGGCAGCCTTATTGGCAAGCAGGGAGCAACTATTAAATCAATACAAGATTCTTCAAAATCTATTGTCCGTATTGTTGgtaagttttgtcatgtttctttatttagttactgtggaatttagtctgtttaactgattgaccatgaaacttgagaagtaaatgatgttatagttttttt----
|| ||||| ||| |||| |||||||||||||||||||| || ||||||||||| |||||||| || |||||||||||||| || ||||| ||||||||||||||| |||  ||| ||| | ||    |  | | |     ||  ||| | | |   ||    ||  | |         |   ||| |||||| | | | |    
CTGCTAGTACCAGCTTCCCAAGCTGGCAGCCTTATTGGGAAACAGGGAGCAACCATTAAATCCATTCAAGATTCTTCAAAGTCCATTGTTCGTATTGTTGgtaaggttttccatatttttcta----gacattatatttctttctctttctcatatatcatacaatacatacattggatccttgaggttatattctctgtcttg