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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTCAGAATCAATTGCTTCTTGGCAGGCCAACCTTTTGTTCGAACCTGTCAAATTTGAGgttcgatgatactatacttgctgactgttgctaaaaaaataatttcagtttcaggagttggtagtagtatacgactacgagagcagccgagcaggtgaatctaaattcagttttctgatgcggcggcgctgcag

Basic information

species Zea mays
transcript GRMZM2G416817_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G416817_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g15000.1 (Oryza sativa), 5'ss of exon 3
GGCTCAGAATCAATTGCTTCTTGGCAGGCCAACCTTTTGTTCGAACCTGTCAAATTTGAGgttcgatgatactatacttgctgactgttgctaaaaaaataatttcagtttcaggagttggtagtagtatacgactacgagagcagccgagcag-gtgaatctaaattcagttttctgatgcggcggcgctgcag
||||| || ||||| ||||||||||||||||||||  | || ||||| || |||||||||||    |  || | | |   |  ||  || ||        | ||||    ||| || |      ||| || | |    |  |  |  |   ||  ||| | |      ||| ||  |                  
GGCTCGGAGTCAATCGCTTCTTGGCAGGCCAACCTCCTATTTGAACCAGTTAAATTTGAGgtatcctactagtctgccatcctac-atttct-------cagtttc----tcatgaatgatggatagaat-caatcttgccaatattcattcattgtgcaccag----cagcttcat------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87152443|gb|DY397232.1|DY397232
EST:     CAATTGCTTCTTGGCAGGCCAACCTTTTGTTCGAACCTGTCAAATTTGAG                         GAGGTGGACGTGCTCGTTCACAGGGGCATATACGAAGCCGCCAAGGGGATG
genomic: CAATTGCTTCTTGGCAGGCCAACCTTTTGTTCGAACCTGTCAAATTTGAGgttcgatgat ... ggcgctgcagGAGGTGGACGTGCTGGTTCACAGGGGCATATACGAAGCCGCCAAGGGGATG
EST: gi|19822757|gb|BQ048781.1|BQ048781
EST:     CAATTGCTTCTTGGCAGGCCAACCTTTTGTTCGAACCTGTCAAATTTGAG                         GAGGTGGACGTGCTCGTTCACAGGGGCATATACGAAGCCGCCAAGGGGATG
genomic: CAATTGCTTCTTGGCAGGCCAACCTTTTGTTCGAACCTGTCAAATTTGAGgttcgatgat ... ggcgctgcagGAGGTGGACGTGCTGGTTCACAGGGGCATATACGAAGCCGCCAAGGGGATG
EST: gi|20301615|gb|BQ164558.1|BQ164558
EST:     CAATTGCTTCTTGGCAGGCCAACCTTTTGTTCGAACCTGTCAAATTTGAG                         GAGGTGGACGTGCTCGTTCACAGGGGCATATACGAAGCCGCCAAGGGGATG
genomic: CAATTGCTTCTTGGCAGGCCAACCTTTTGTTCGAACCTGTCAAATTTGAGgttcgatgat ... ggcgctgcagGAGGTGGACGTGCTGGTTCACAGGGGCATATACGAAGCCGCCAAGGGGATG
EST: gi|149070613|gb|EE159022.2|EE159022
EST:     CAATTGCTTCTTGGCAGGCCAACCTTTTGTTCGAACCTGTCAAATTTGAG                         GAGGTGGACGTGCTGGTTCACAGGGGCATATACGAAGCCGCCCAGGGGATG
genomic: CAATTGCTTCTTGGCAGGCCAACCTTTTGTTCGAACCTGTCAAATTTGAGgttcgatgat ... ggcgctgcagGAGGTGGACGTGCTGGTTCACAGGGGCATATACGAAGCCGCCAAGGGGATG