Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGAACAAATCTCTCGAGGGACTGCAGGCCAATGTCCAGAGGCTTAAGACGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtagaaatactttcctgaatgccttgtcccttgaagacgcctctcttgaagacatgctggttgttttgacttctaatcccttgtggcctaccttcaatgcag

Basic information

species Zea mays
transcript GRMZM2G409407_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G409407_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA16G08090.1 (Glycine max), 5'ss of exon 4
CAAGAACAAATCTCTCGAGGGACTGCAGGCCAATGTCCAGAGGCTTAAGACGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtaga-------------aatactttcctgaatgc------------cttgtcccttgaagacgcctctcttgaagacatgctg-gttgttttgacttctaatcccttgtggcc-taccttcaatgcag
 |||||    ||| | ||| | |||||||||||||| |||||||| || || |||||||| ||| ||||| | ||||||||  | || | ||||| ||| |||    || |             | || |||  ||  |               || |    ||   |    || |||| |   | |      | ||     ||   ||   || || || ||  | |  |||||
AAAGAATCGTTCTTTGGAGAGTCTGCAGGCCAATGTGCAGAGGCTCAAAACCTACAAGGCTAAGTTGGTTGTGTTCCCAAGAAGGGCACACAAGGTCAAGgtaaagctaaattcttcaattattattaatttgatggttatgtgcaaattttatttattttatggtcatcattcccttggaagtaggaaacaatattgaagtttgagattgtttatgtccctatttgctttgcag

upper sequence: GRMZM2G409407_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA16G17370.2 (Glycine max), 5'ss of exon 3
CAAGAACAAATCTCTCGAGGGACTGCAGGCCAATGTCCAGAGGCTTAAGACGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtagaaatactttcctgaatgccttgtcccttgaagacgcctctcttgaagacatgctggttgtt-ttgacttctaatcccttgtggcctaccttcaatgcag--------------------------
 |||||    ||| | ||| | |||||||||||||| |||||||| || || |||||||| ||| ||||| | ||||||||  | || | ||||| ||| |||    |  |||| |||   | | |   |||    ||  |   ||   | ||    |  |  ||||  |  ||  ||| |||    |        |  ||  |    |                          
AAAGAATCGTTCTTTGGAGAGTCTGCAGGCCAATGTGCAGAGGCTCAAAACCTACAAGGCTAAGTTGGTTGTGTTCCCAAGAAGGGCACACAAGGTCAAGgtaaagct--aaattcttcaatcattaatttgatgatt--atgtgcaaattttatttattttatggtcatcattaccttgtaagtagtaaacattgaagtttgagattgtttacatccctaattttgctttgcag

upper sequence: GRMZM2G409407_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT3G48960.1 (Arabidopsis thaliana), 5'ss of exon 3
CAAGAACAAATCTCTCGAGGGACTGCAGGCCAATGTCCAGAGGCTTAAGACGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtagaaatactttcctgaatgccttgtcccttgaagacgcctctcttgaagacatgctggttgttttgacttctaatcccttgtggcctaccttcaatgcag
|||||||   ||| | |||||  | ||  |||| ||||||||||| || || |||||||| ||| |||||||||||||  |  |||| || | || ||| |||    |    |  |       | ||  ||     |   ||  | || | |  | |  |||    | | | |||  |||      || ||   |   ||   |  ||
CAAGAACCGGTCTTTGGAGGGTTTTCAAACCAACGTCCAGAGGCTGAAAACCTACAAGGCTAAGTTGGTTATCTTCCCGCGCTGTGCCCGAACGGTCAAGgtactccttcgcaagc------aactggtttagggttc--agtggactgtatgaatggaatggatttggatatgatctctttgttgttatgcttttgtttgtgtttag

upper sequence: GRMZM2G409407_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv13s0047g01160.t01 (Vitis vinifera), 5'ss of exon 3
CAAGAACAAATCTCTCGAGGGACTGCAGGCCAATGTCCAGAGGCTTAAGACGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtagaaatactttcctgaatgccttgtcccttgaagacgcctctcttgaagacatgctggt-tgttttgacttctaatcccttgtggcctaccttcaatgcag
 ||||||   ||||| ||| | || || || |||||||||||| | ||||| |||||||||||  ||||| |||||||||| |||||||||||   ||| ||   | ||     |||   |  ||||| ||         | | ||    | |      ||| |    |  | | | | ||   |  |||  ||               
TAAGAACCGTTCTCTAGAGAGCCTTCAAGCAAATGTCCAGAGGTTGAAGACATACAAGGCCAAATTGGTTGTCTTCCCAAGACGTGCTCGCAAATTCAAGgtcatttta-----actggacgaaatgcttttgattaaacaaaagctatccatttctgtatgttaacatcatgttattgctctccttttgctgcag-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13558589|gb|BG549945.1|BG549945
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|18177072|gb|BM378282.1|BM378282
EST:     CGT-CAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|76935718|gb|DV174447.1|DV174447
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|17932033|gb|BM268993.1|BM268993
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|78111808|gb|DV530205.1|DV530205
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|60398465|gb|DN231281.1|DN231281
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|211266082|gb|FL031061.1|FL031061
EST:     GTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGTCAAAT                         GCCGGGGACTCTACTCGGGAAGAGCTTGCCACG-CCACCCAGGGTC-AGG
genomic: GTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAA-Tgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGG-TCCAGG
EST: gi|18165489|gb|BM335328.1|BM335328
EST:     CCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|18175297|gb|BM350662.1|BM350662
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|18175163|gb|BM350551.1|BM350551
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|18163726|gb|BM333565.1|BM333565
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|17932056|gb|BM269016.1|BM269016
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|76917654|gb|DV166940.1|DV166940
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|18166982|gb|BM336821.1|BM336821
EST:     TCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: TCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|18167138|gb|BM336977.1|BM336977
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|211247720|gb|FL179850.1|FL179850
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|18171200|gb|BM341040.1|BM341040
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|211456254|gb|FL273553.1|FL273553
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|211129396|gb|FL066372.1|FL066372
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|29945578|gb|CB815711.1|CB815711
EST:     AGGCCAAGCTGGTNNTATCTTCCCAAAGGNCGTGCTNCGCAAGNGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCC-CGGCC-CCCAGGTCCAGGG
genomic: AGGCCAAGCTGGT--TATCTTCCCAA-GG-CGTGCT-CGCAAG-GCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGG
EST: gi|211266087|gb|FL031066.1|FL031066
EST:     CGTACAAGGCCAAGCTGGTTATCTTCNCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCG
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCG
EST: gi|18170677|gb|BM340517.1|BM340517
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|33091972|gb|CF051966.1|CF051966
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTA
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTA
EST: gi|211263650|gb|FL031054.1|FL031054
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGTCAAT                         GCCGGGGACTCTACTCCGGAGGA
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGA
EST: gi|17929883|gb|BM266843.1|BM266843
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|71774174|gb|DR972054.1|DR972054
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|76281416|gb|DV020984.1|DV020984
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|18164502|gb|BM334341.1|BM334341
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|76917652|gb|DV166939.1|DV166939
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|17932061|gb|BM269021.1|BM269021
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|67026835|gb|CO455584.1|CO455584
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|211021602|gb|FL466049.1|FL466049
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|27522089|gb|CA989195.1|CA989195
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|78085923|gb|DV514316.1|DV514316
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|18166028|gb|BM335867.1|BM335867
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|18171422|gb|BM341262.1|BM341262
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|18171851|gb|BM341691.1|BM341691
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|18174436|gb|BM349824.1|BM349824
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|6973668|gb|AW438242.1|AW438242
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|60353856|gb|DN220829.1|DN220829
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|71436833|gb|DR817883.1|DR817883
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|29946616|gb|CB816239.1|CB816239
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|211266077|gb|FL031056.1|FL031056
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAG
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAG
EST: gi|18166613|gb|BM336452.1|BM336452
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|18165946|gb|BM335785.1|BM335785
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|71774173|gb|DR972053.1|DR972053
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|28986547|gb|CB351191.1|CB351191
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|16380285|gb|BI993410.1|BI993410
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|78180971|gb|DV551344.1|DV551344
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|7238188|gb|AW573410.1|AW573410
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|18176951|gb|BM378161.1|BM378161
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCC-AGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|86474657|gb|DY241027.1|DY241027
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTTTACTCCGGAGGAGCTTGCCACGGCCCCCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|116829000|gb|EC863170.1|EC863170
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGCT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|18173527|gb|BM348915.1|BM348915
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|60348810|gb|DN215783.1|DN215783
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|78086900|gb|DV515293.1|DV515293
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|18162121|gb|BM331960.1|BM331960
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAAT                         GCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTACTCCGGAGGAGCTTGCCACGGCCACCCAGGTCCAGGGT
EST: gi|211263645|gb|FL031049.1|FL031049
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGTCAAT                         GCCGGGGACTC
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTC
EST: gi|211266081|gb|FL031060.1|FL031060
EST:     CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGTCAAT                         GCCGGGGACTCTA
genomic: CGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtag ... ttcaatgcagGCCGGCGACTCTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGAACAAATCTCTCGAGGGACTGCAGGCCAATGTCCAGAGGCTTAAGACGTACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGCCAATgtatgtgtagaaatactttcctgaatgccttgtcccttgaagacgcctctcttgaagacatgctggttgttttgacttctaatcccttgtggcctaccttcaatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG