Sequence
atgc intronic sequence ATGC exonic sequenceTCCTGTTTACTTCAATGAGCCTTTATCTTCTCTCCAGAAGTGCTTTGAAGAGTTGGAGTACTCTTATTTGCTGGATCGTGCATATGAATGTGGTTTAAGAgtatgcctgtttctctactttcctgttttcctcgactcaaatattttcttttgaatgataatctgacccaaacacctaaatttaactacttaaacctgct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G409265_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os10g40590.1 (Oryza sativa), 5'ss of exon 4
TCCTGTTTACTTCAATGAGCCTTTATCTTCTCTCCAGAAGTGCTTTGAAGAGTTGGAGTACTCTTATTTGCTGGATCGTGCATATGAATGTGGTTTAAGAgtatgcctgtttctctactttcctgttttcctcgactcaaatattttcttttgaatgataatctgacccaaacacctaaatttaactacttaaacctgct-----
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TCCTGTTTACTTTAATGAACCATTGTCTTCTCTTCAAAAGTGCTTTGAAGATTTGGAGTATTCCAATTTACTGGATCGTGCATATGAATATGGTTCAAGGgtatgcttatttctataacttccaccttt-----attgtgaaataaactgctagatattatatcattctgtatatcacaattgaggagcataaactttgtcgtac
upper sequence: GRMZM2G409265_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA17G14820.1 (Glycine max), 5'ss of exon 5
TCCTGTTTACTTCAATGAGCCTTTATCTTCTCTCCAGAAGTGCTTTGAAGAGTTGGAGTACTCTTATTTGCTGGATCGTGCATATGAATGTGGTTTAAGAgtatgcc-tgtttctctactttc-ctgttttcctcgactcaaatattttcttttgaatgataatctgacccaaacacctaaatttaactacttaaacctgct
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TCCTGTATACTTTAATGAGCCAATATCATCTCTTCAGAAATGTTTTGAGGACTTGGAGTACTCTTTTCTTCTGGATCGAGCTTATGAGTATGGAAAATCAgtaagatatacatctttatcttgattgtgctattcacttctcttgcagtgaaaacaatacaaatttcaaagtagtgttggtacatgtccttttat-tctgt-
upper sequence: GRMZM2G409265_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT4G12460.1 (Arabidopsis thaliana), 5'ss of exon 4
TCCTGTTTACTTCAATGAGCCTTTATCTTCTCTCCAGAAGTGCTTTGAAGAGTTGGAGTACTCTTATTTGCTGGATCGTGCATATGAATGTGGTTTAAGAgtatgcctgtttctctactttcctgttttcctcgactcaaatattttcttttgaatgataatctgacccaaacacctaaatttaact-acttaaacctgct-
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TCCTGTTTATTTCAATGAACCAATATCTTCCCTCCAAAAGTGTTTTGAAGACTTGGAGTACTCTTATCTCTTGGACCAAGCATATGAATACGGAAAATCCgtaagtgatttcaaaaaacttactgttgtatgtaattc--gcttccttctggaaatgcaaacgttttctctactcttaacttttatttaattccaattacta
upper sequence: GRMZM2G409265_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 3
TCCTGTTTACTTCAATGAGCCTTTATCTTCTCTCCAGAAGTGCTTTGAAGAGTTGGAGTACTCTTATTTGCTGGATCGTGCATATGAATGTGGTTTAAGAgtatgcctgtttctctactttcctgttttcctcgactcaaatattttcttttgaatgataatctgacccaaacacctaaatttaactacttaaacctgct----
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CCCTGTTTATTTTAATGAGCCAATATCATCCCTTCAGAAATGTTTTGAGGACTTGGAGTACTCTTATCTTTTGGATCGAGCATATGAATATGGAAAAGCGgtatgcatatctttatctcttactctctccctttgat-ataggtgtacttgc-attgttctttttggttatttctccttattatgctacat--gcttgtctataMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211525268|gb|FL432923.1|FL432923EST: AGTTGGAGTACTCTTATTTGCTGGATCGTGCATATGAATGTGGTTTAAGA GGGAATGGTCTGATGAGAATTATTTATGTCGCTGCATTTGCGGTCTCTGGA
genomic: AGTTGGAGTACTCTTATTTGCTGGATCGTGCATATGAATGTGGTTTAAGAgtatgcctgt ... ctgcattcagGGGAATGGTCTGATGAGAATTATTTATGTCGCTGCATTTGCGGTCTCTGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCTGTTTACTTCAATGAGCCTTTATCTTCTCTCCAGAAGTGCTTTGAAGAGTTGGAGTACTCTTATTTGCTGGATCGTGCATATGAATGTGGTTTAAGAgtatgcctgtttctctactttcctgttttcctcgactcaaatattttcttttgaatgataatctgacccaaacacctaaatttaactacttaaacctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA