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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttctctatgtaaggatacactgcatgtgcatctgtgtttgtatgcattgtagaattatcacttctaaattcaactggtagtcttactacttaag...

Basic information

species Zea mays
transcript GRMZM2G408242_T03
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211116523|gb|FL229712.1|FL229712
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211116525|gb|FL229714.1|FL229714
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|88748070|gb|DY532211.1|DY532211
EST:     AGTTGTATCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAAACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211115736|gb|FL229707.1|FL229707
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211115731|gb|FL229702.1|FL229702
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|60352426|gb|DN219399.1|DN219399
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211117332|gb|FL229741.1|FL229741
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGT
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagG-AAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGT
EST: gi|211115739|gb|FL229710.1|FL229710
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTV
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211116530|gb|FL229719.1|FL229719
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211115740|gb|FL229711.1|FL229711
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211116529|gb|FL229718.1|FL229718
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211117322|gb|FL229731.1|FL229731
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211116535|gb|FL229724.1|FL229724
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211116537|gb|FL229726.1|FL229726
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211117328|gb|FL229737.1|FL229737
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211116524|gb|FL229713.1|FL229713
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCANGCGTGTGTATACAAC                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGT-GCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211117330|gb|FL229739.1|FL229739
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211116528|gb|FL229717.1|FL229717
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|18650040|gb|BM498859.1|BM498859
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTC
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTC
EST: gi|211116534|gb|FL229723.1|FL229723
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|22818772|gb|BU498862.1|BU498862
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|17970138|gb|BM276903.1|BM276903
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|5325108|gb|AI783299.1|AI783299
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|19822800|gb|BQ048824.1|BQ048824
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTC
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTC
EST: gi|211116533|gb|FL229722.1|FL229722
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211115728|gb|FL229699.1|FL229699
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211117326|gb|FL229735.1|FL229735
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211114947|gb|FL229695.1|FL229695
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211116532|gb|FL229721.1|FL229721
EST:     ARGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: A-GTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211115733|gb|FL229704.1|FL229704
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211116531|gb|FL229720.1|FL229720
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|60346539|gb|DN213512.1|DN213512
EST:     GCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGT
genomic: GCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGA-GCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGT
EST: gi|211117318|gb|FL229727.1|FL229727
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|74235410|gb|DT643324.1|DT643324
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211115727|gb|FL229698.1|FL229698
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|50333682|gb|CO528808.1|CO528808
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211117324|gb|FL229733.1|FL229733
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211117325|gb|FL229734.1|FL229734
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|6020447|gb|AW065375.1|AW065375
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211117323|gb|FL229732.1|FL229732
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|149084617|gb|EE174095.2|EE174095
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211117321|gb|FL229730.1|FL229730
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211115735|gb|FL229706.1|FL229706
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|148990759|gb|EE032170.2|EE032170
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|93015766|gb|EB641286.1|EB641286
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211115729|gb|FL229700.1|FL229700
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211114948|gb|FL229696.1|FL229696
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|26456727|gb|CA828310.1|CA828310
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|20803321|gb|BQ294371.1|BQ294371
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211115737|gb|FL229708.1|FL229708
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|22521612|gb|BU080423.1|BU080423
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211115732|gb|FL229703.1|FL229703
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211115730|gb|FL229701.1|FL229701
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211117331|gb|FL229740.1|FL229740
EST:     AGTTGTAGCTACAGCAATATCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211114945|gb|FL229693.1|FL229693
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211116526|gb|FL229715.1|FL229715
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTT-GTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211115726|gb|FL229697.1|FL229697
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211117329|gb|FL229738.1|FL229738
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|148937775|gb|EC881986.2|EC881986
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: gi|211116527|gb|FL229716.1|FL229716
EST:     AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG                         GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCAC-TACTTGTTTGTA
genomic: AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 125

AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTATTTGGCATCTAAGGTGGAGGAGAGTACAGTGCAAGCCCGACTTCTTGTA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 112

AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTATTTGGCATCTAAGGTGGAGGAGAGTACAGTGCAAGCCCGACTTCTTGTA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 124

AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTATTTGGCATCTAAGGTGGAGGAGAGTACAGTGCAAGCCCGACTTCTTGTA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 122

AGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTATTTGGCATCTAAGGTGGAGGAGAGTACAGTGCAAGCCCGACTTCTTGTA