1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TACTGATTCACGGCTGAGACCAGACCAGCGCCACCTAGAGAATGGTGAATACGAGAAAGCGAATGCAGAGAAGCTGAGGTTGGAACGACGGCAAAGAATGgtatccgctctcgcttcatagatcacaatccatacatgttgtttcttcatgttctctgtctcattgcag
species | Zea mays |
transcript | GRMZM2G402653_T04 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACGAGAAAGCGAATGCAGAGAAGCTGAGGTTGGAACGACGGCAAAGAATG TCTACTAAACTTCAAGACAATGGCTGGAAATCCCGGTGGTTCGAGCAAGACEST: gi|37374860|gb|CF623827.1|CF623827
genomic: ACGAGAAAGCGAATGCAGAGAAGCTGAGGTTGGAACGACGGCAAAGAATGgtatccgctc ... ctcattgcagTCTACTAAACTTCAAGACAATGGCTGGAAATCCCGGTGGTTCGAGCAAGAC
EST: ACGAGAAAGCGAATGCAGAGAAGCTGAGGTTGGAACGACGACAAAGAATG TCTACTAAACTTCAAGACAATGGCTGGAAATCCCGGTGGTTCGAGCAAGACEST: gi|67022546|gb|CO451295.1|CO451295
genomic: ACGAGAAAGCGAATGCAGAGAAGCTGAGGTTGGAACGACGGCAAAGAATGgtatccgctc ... ctcattgcagTCTACTAAACTTCAAGACAATGGCTGGAAATCCCGGTGGTTCGAGCAAGAC
EST: ACGAGAAAGCGAATGCAGAGAAGCTGAGGTTGGAACGACGACAAAGAATG TCTACTAAACTTCAAGACAATGGCTGGAAATCCCGGTGGTTCGAGCAAGACEST: gi|60400127|gb|DN232934.1|DN232934
genomic: ACGAGAAAGCGAATGCAGAGAAGCTGAGGTTGGAACGACGGCAAAGAATGgtatccgctc ... ctcattgcagTCTACTAAACTTCAAGACAATGGCTGGAAATCCCGGTGGTTCGAGCAAGAC
EST: ACGAGAAAGCGAATGCAGAGAAGCTGAGGTTGGAACGACGGCAAAGAATG TCTACTAAACTTCAAGACAATGGCTGGAAATCCCGGTGGTTCGAGCAAGAC
genomic: ACGAGAAAGCGAATGCAGAGAAGCTGAGGTTGGAACGACGGCAAAGAATGgtatccgctc ... ctcattgcagTCTACTAAACTTCAAGACAATGGCTGGAAATCCCGGTGGTTCGAGCAAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTGATTCACGGCTGAGACCAGACCAGCGCCACCTAGAGAATGGTGAATACGAGAAAGCGAATGCAGAGAAGCTGAGGTTGGAACGACGGCAAAGAATGgtatccgctctcgcttcatagatcacaatccatacatgttgtttcttcatgttctctgtctcattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA